View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11283_high_5 (Length: 423)
Name: NF11283_high_5
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 34438033 - 34437687
Alignment:
| Q |
20 |
gaactatggatttatgtacactcaattgagtcactactataaattcattccctctggacaaatttgctcaccccaaaacaatacacatttctctatcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34438033 |
gaactatggatttatgtacactcaattgagtcactactataaattcattccctctggacaaatttgctcaccccaaaacaatacacatttctctatcttt |
34437934 |
T |
|
| Q |
120 |
----gcaagacaacacaacacagccatggttgcctcagtctcagctgttagagctgtcagtggaacaccagtatgttgctttacctacctacttatcaat |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34437933 |
ctttgcaagacaacacaacccagccatggttgcctcagtctcagctgttagagctgtcagtggaacaccagtatgttgctttacctacctacttttcaat |
34437834 |
T |
|
| Q |
216 |
tattcttgttcttgtgtaattttataaatcatat------atatatnnnnnnnnnnnnntacatac----ttgataaatcattactttataagtgtaatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34437833 |
tattcttgttcttgtgtaattttataaatcatatatatatatatatacacacacacacacacatacagacttgataaatcattactttataagtgtaatg |
34437734 |
T |
|
| Q |
306 |
ttacaattgtatatcaaataatgatttaaatgtttggaatttggatt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34437733 |
ttacaattgtatatcaaataatgatttaaatgtttggaatttggatt |
34437687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 34437656 - 34437611
Alignment:
| Q |
371 |
ttccaatcaaacaatctagaccgtcctattaagatcgttcatctca |
416 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34437656 |
ttccaatcaaacaatctagaccgacctattaagatcgtacatctca |
34437611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University