View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_high_8 (Length: 355)
Name: NF11283_high_8
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 51 - 337
Target Start/End: Complemental strand, 27144137 - 27143851
Alignment:
| Q |
51 |
ttagaattaaagtatactttagaaacaatcttaaaaattgtggttagacataacataattccataaggtcaatttgtgatgtggaattatcctccactta |
150 |
Q |
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| T |
27144137 |
ttagaattgaagtatactttcgaaacaattttagaaattgtggttagacataatataattttataaggtcaacttgtgaggtgggattgtcctccactta |
27144038 |
T |
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| Q |
151 |
taaatatattcacgtcatattttatccgatgtaaagctcttgaataaacaatttgttacttgctgaagttgattaactataagtgtattaaccacttgag |
250 |
Q |
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| T |
27144037 |
taaatatattcaagtcatattttatccggtgtaaagctcttgaacaaacaatttattacttgctgaagtttattaactacaaatatattaatcacttgag |
27143938 |
T |
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| Q |
251 |
ataaattatttggttttggttttcaactataaacattttttagggaagaagcactttacgtgcatttcgttttcttgcgtggttttc |
337 |
Q |
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| T |
27143937 |
ataaattatttggttttggttttcaactaagaacatttttttgggaagaagcactttacgtgcatttcgttttcttgcgtggttttc |
27143851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 27143858 - 27143811
Alignment:
| Q |
267 |
tggttttcaactataaacattttttagggaagaagcactttacgtgcat |
315 |
Q |
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| T |
27143858 |
tggttttcaactacgaacattttt-agggaagaagcactttacgtgcat |
27143811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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