View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11283_low_1 (Length: 726)

Name: NF11283_low_1
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11283_low_1
NF11283_low_1
[»] chr4 (1 HSPs)
chr4 (19-707)||(35410029-35410716)


Alignment Details
Target: chr4 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 19 - 707
Target Start/End: Original strand, 35410029 - 35410716
Alignment:
Q  19 catcagccgcataaggataatcttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        ||||||||||||    
T  35410029 catcagccgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctgaaaaaaa-gaaagaataaat 35410127  T
Q  119 agttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  35410128 agttagatcttatcttcttcacttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttct 35410227  T
Q  219 ttaccttcttttaagatcggcaggaagaccttccatgtcaaatcgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtg 318  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410228 ttaccttcttttaagatcggcaggaagaccttccatgtcaaaccgccaccaatctttataggcagcacacgtaatttgcatacagtatctcccgggagtg 35410327  T
Q  319 tagtttttctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410328 tagtttttctctatggaaccgtctgcattaacgagtacctcgcgggctgttgcatttgtcttgagtgtgtatcgcatatggggatgcagaagcttgaata 35410427  T
Q  419 caggatgcatcacgcttaattgccgatgagctgcaattattaatggttccatgcatgcgtgtattcttaacctgttcggttatcataggtcaaatgtcat 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410428 caggatgcatcacgcttaattgccgatgagctgcaattattaatggttccatgcatgcgtgtattcttaacctgttcggttatcataggtcaaatgtcat 35410527  T
Q  519 tactaaatttctaaaacaaaagttttggtcaagtttttctcaaatacatatatttgcatggaaatagtaattcataccaatggtgcacaagtgtatgaac 618  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35410528 tactaaatttctaaaacaaaagttttgggcaagtttttctcaaatacatatatttgcatggaaataataattcataccaatggtgcacaagtgtatgaac 35410627  T
Q  619 gccagcatcattagcgcaaacgtgagctttgcctaattgccagagccatttagaggtttcatctacagcaggggttagaacctgcttgt 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410628 gccagcatcattagcgcaaacgtgagctttgcctaattgccagagccatttagaggtttcatctacagcaggggttagaacctgcttgt 35410716  T

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