View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_low_10 (Length: 349)
Name: NF11283_low_10
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 180 - 331
Target Start/End: Complemental strand, 35047419 - 35047268
Alignment:
| Q |
180 |
gccaatatatgttttagacttttggttaataaacacatactttctctattttaataaagaaaaaacgatattggtggtcgtaaccagtgaattaaaacca |
279 |
Q |
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| T |
35047419 |
gccaatatatgttttagacttttggttaataaacacatactttctctattttaataaagaaaaaacgatattggtggtcgtaaccagtgaattaaaacca |
35047320 |
T |
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| Q |
280 |
gacacaatattgttaattttgcatgacatgcatccatattagctcggagttc |
331 |
Q |
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| T |
35047319 |
gacacaatattgttaatcttgcatgacatgcatccatattagctcggagttc |
35047268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 35048076 - 35047917
Alignment:
| Q |
21 |
taaggttctttctatattttaaaatgggggagcggagtcgaatataatgaaatagtgtagaattagacatcctacattttcgagttaaatcggaaacatc |
120 |
Q |
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| T |
35048076 |
taaggttctttctatattttaaaatgggggagcggagccgaacataatgaaatagtgtggaattagacatcctacattttcgagttaaatcggaaacatc |
35047977 |
T |
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| Q |
121 |
ttctaagcaagcaataagatttaacagaattatttaaggccttcatagaacattggatgg |
180 |
Q |
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| T |
35047976 |
ttctaagcaagcaataagatttaacagaattatttaaggccttcatagaacattggatgg |
35047917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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