View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_low_12 (Length: 288)
Name: NF11283_low_12
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 41153140 - 41153310
Alignment:
| Q |
14 |
caaaggaggagagacttgaggaacaaaagagtctatagatagtcctctaatcaaatgaagatgcccattaaatgaaatgatctcgacctaattgaatgag |
113 |
Q |
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| T |
41153140 |
caaaggaggagagacttcaggaacaaaagagtctatagatagtcctctaatcaaatgaagatgtccattaaatgaaatgatctcgacctaattgaatgag |
41153239 |
T |
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| Q |
114 |
cctgttttgcaaacatacgaatcactttgttcgaatggattggataacagtgtccaaacaaccaaagggag |
184 |
Q |
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| T |
41153240 |
cctgttttgcaaacatacgaatcactttgttcgaatggattggataacagtgtccaaacaaccaaagggag |
41153310 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 41153322 - 41153366
Alignment:
| Q |
244 |
ttcttcaaaggatctaatgacaagaacacacactaaatataagaa |
288 |
Q |
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| T |
41153322 |
ttcttcaaaggatctaatgacaagaacacacactaaatataagaa |
41153366 |
T |
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