View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_low_2 (Length: 725)
Name: NF11283_low_2
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 17 - 716
Target Start/End: Complemental strand, 43868072 - 43867371
Alignment:
| Q |
17 |
gaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgcttgtgctgttgttgttaccttagcagatgcggtttg |
116 |
Q |
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| T |
43868072 |
gaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgccatgcttgtgctgttgttgttaccttagcagacgcggtttg |
43867973 |
T |
|
| Q |
117 |
aaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867972 |
aaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaa |
43867873 |
T |
|
| Q |
217 |
cgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867872 |
cgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacctgcatctgcatcacctttcatgtctataatcatagaatata |
43867773 |
T |
|
| Q |
317 |
actaaactatattgttttatgtcnnnnnnnnnnntgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtca |
416 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867772 |
actaaactatattgttttatgtc----aaaaaaatgattcaattaatggtttgtgtttgttgaaactagacaatgtgatgaaggagacacactagtgtca |
43867677 |
T |
|
| Q |
417 |
gtaggtac------nnnnnnnncttctctctgcccatgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatg |
510 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867676 |
gtaggtactttttttttttttttttctctctgcccatgcacttttggtaatttgctacaggaatattaatggaggttaatgggacccaccaattggtatg |
43867577 |
T |
|
| Q |
511 |
atcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattaggg |
610 |
Q |
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| T |
43867576 |
atcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaattggttgtctttttaattataggatttcttatggacccattaggg |
43867477 |
T |
|
| Q |
611 |
tttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgcttt |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867476 |
tttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattcaataatgtctgctatttgaggtcccctctccttaggttgcttt |
43867377 |
T |
|
| Q |
711 |
catctc |
716 |
Q |
| |
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|||||| |
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| T |
43867376 |
catctc |
43867371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
171 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
224 |
Q |
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||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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