View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11283_low_4 (Length: 480)

Name: NF11283_low_4
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11283_low_4
NF11283_low_4
[»] chr3 (15 HSPs)
chr3 (1-466)||(2409864-2410349)
chr3 (203-297)||(52925714-52925807)
chr3 (206-302)||(3845210-3845305)
chr3 (260-304)||(21513425-21513469)
chr3 (205-280)||(3776430-3776504)
chr3 (225-304)||(4096393-4096472)
chr3 (205-300)||(39256566-39256660)
chr3 (265-304)||(41115458-41115497)
chr3 (258-304)||(33548186-33548232)
chr3 (266-304)||(35132368-35132406)
chr3 (259-304)||(43987648-43987693)
chr3 (209-242)||(48089854-48089887)
chr3 (204-257)||(51965623-51965676)
chr3 (203-283)||(25129638-25129718)
chr3 (258-302)||(54596761-54596805)
[»] scaffold0393 (2 HSPs)
scaffold0393 (1-304)||(12403-12726)
scaffold0393 (303-466)||(12174-12341)
[»] chr8 (11 HSPs)
chr8 (2-162)||(30598231-30598391)
chr8 (205-304)||(41614735-41614833)
chr8 (204-280)||(39648265-39648340)
chr8 (260-299)||(13929808-13929847)
chr8 (205-279)||(30251629-30251702)
chr8 (206-288)||(36448006-36448087)
chr8 (203-304)||(40880986-40881088)
chr8 (267-304)||(36447966-36448003)
chr8 (208-288)||(11038076-11038155)
chr8 (260-304)||(34469247-34469291)
chr8 (260-304)||(41138847-41138891)
[»] chr6 (7 HSPs)
chr6 (205-304)||(29240548-29240646)
chr6 (203-304)||(6544595-6544695)
chr6 (204-304)||(33136579-33136677)
chr6 (221-280)||(34620793-34620851)
chr6 (221-280)||(34748230-34748288)
chr6 (258-302)||(25196026-25196070)
chr6 (260-304)||(26550464-26550508)
[»] chr7 (6 HSPs)
chr7 (210-304)||(48290287-48290380)
chr7 (265-304)||(45369112-45369151)
chr7 (206-304)||(12306626-12306723)
chr7 (202-239)||(33504562-33504599)
chr7 (205-304)||(15050184-15050281)
chr7 (203-243)||(27624939-27624979)
[»] chr5 (13 HSPs)
chr5 (203-304)||(29922783-29922883)
chr5 (258-304)||(38045392-38045438)
chr5 (211-304)||(10898619-10898711)
chr5 (206-276)||(2938016-2938086)
chr5 (260-304)||(1105384-1105428)
chr5 (207-302)||(10859919-10860013)
chr5 (260-299)||(12208944-12208983)
chr5 (209-279)||(6622174-6622243)
chr5 (203-304)||(11911905-11912005)
chr5 (205-304)||(2973352-2973454)
chr5 (260-304)||(17862468-17862512)
chr5 (264-304)||(29922575-29922615)
chr5 (309-337)||(35139024-35139052)
[»] chr1 (11 HSPs)
chr1 (209-306)||(32088667-32088763)
chr1 (209-304)||(18325187-18325281)
chr1 (205-304)||(48635287-48635386)
chr1 (258-304)||(15452429-15452475)
chr1 (207-304)||(6021695-6021793)
chr1 (206-293)||(15478108-15478194)
chr1 (295-334)||(31375227-31375266)
chr1 (222-280)||(8381892-8381949)
chr1 (210-304)||(41516883-41516976)
chr1 (205-303)||(49079311-49079408)
chr1 (260-304)||(51158510-51158554)
[»] chr2 (11 HSPs)
chr2 (205-304)||(41037049-41037147)
chr2 (206-304)||(37561599-37561695)
chr2 (295-384)||(38129420-38129509)
chr2 (203-280)||(7629751-7629827)
chr2 (205-302)||(15220933-15221029)
chr2 (265-305)||(39702527-39702567)
chr2 (207-282)||(43717235-43717309)
chr2 (209-302)||(9943318-9943410)
chr2 (206-242)||(4778445-4778481)
chr2 (260-304)||(7630361-7630405)
chr2 (234-278)||(14577907-14577950)
[»] chr4 (10 HSPs)
chr4 (205-280)||(50375572-50375644)
chr4 (205-304)||(2635054-2635152)
chr4 (209-304)||(41058821-41058915)
chr4 (202-296)||(29468736-29468829)
chr4 (209-263)||(37339309-37339363)
chr4 (205-255)||(47596440-47596490)
chr4 (260-300)||(2171732-2171772)
chr4 (260-304)||(9082918-9082962)
chr4 (260-304)||(22250171-22250215)
chr4 (260-304)||(25318992-25319036)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 2410349 - 2409864
Alignment:
Q  1 cttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcaaagtttcaatcaagggaatgaatgattccttacactgtcatgaaaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2410349 cttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgtcatgaaaatt 2410250  T
Q  101 tacaaagcgaacaatattaatatattttagccaacaattagatgcaaccaatgaagctaacata--------------------atgtaaacgcagacac 180  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                    ||||||||||||||||    
T  2410249 tacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacaaacaggacactaacatgtaaacgcagacac 2410150  T
Q  181 aaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410149 aaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggtggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 2410050  T
Q  281 atgttctcaagtagaattgattttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcattttt 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410049 atgttctcaagtagaattgattttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcattttt 2409950  T
Q  381 tgtctcacaaaaccaaacatacaataaatgtaaccacatatgtcggtgtctgacacgtgccttcaatctaaagtgtcggtgctaca 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2409949 tgtctcacaaaaccaaacatacaataaatgtaaccacatatgtcggtgtctgacacgtgccttcaatctaaagagtcagtgctaca 2409864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 52925807 - 52925714
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaat 297  Q
    |||||||||||| | || ||||||||||||||||||||||| ||||| |||||| | |||| |||||||||||||||| || ||||| |||||||    
T  52925807 ttagtgtatgttcggttccacttttggaggagtcaaaattgattctagaggtgt-ataattgattttgacatgtttggttgctctcacgtagaat 52925714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 206 - 302
Target Start/End: Complemental strand, 3845305 - 3845210
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    ||||||||||| || ||||||||||| |  |||||||| ||||| ||||||| || || |||||||||||||||  || ||||||||||||||||||    
T  3845305 gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgtagaa-ttgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 21513469 - 21513425
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||    
T  21513469 aattgattttaacatgcttggatgttctcaagtagaattgatttt 21513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 280
Target Start/End: Original strand, 3776430 - 3776504
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    ||||||| |||| || |||||||||||||| |||||||| || || |||||| | |||| ||||||||||||||||    
T  3776430 agtgtatatttggttccacttttggaggagacaaaattggttatagaggtgt-agaattgattttgacatgtttgg 3776504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 4096472 - 4096393
Alignment:
Q  225 tttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||| ||||||||||| || | ||  |||||| ||||||||||| |||||| | |||| | ||||||||||||||||    
T  4096472 tttggagcagtcaaaattgattttgaaaatgtaaatatttattttgatatgtttagttgtttttaagtagaattgatttt 4096393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 39256566 - 39256660
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattga 300  Q
    ||||| |||||| || ||||||||||| | ||||||||  ||||| |||||| | |||| |||||||||||||||  |  ||||||||||||||||    
T  39256566 agtgtgtgtttggttccacttttggagaaatcaaaattagttctagaggtgt-agaattgattttgacatgtttgattactctcaagtagaattga 39256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 304
Target Start/End: Complemental strand, 41115497 - 41115458
Alignment:
Q  265 attttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  41115497 attttgacatgtttggatgttttaaagtagaattgatttt 41115458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 33548186 - 33548232
Alignment:
Q  258 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||| ||||||||||||||||||| | | ||||||||||||||||    
T  33548186 aaaattgattttgacatgtttggatgctattaagtagaattgatttt 33548232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 35132406 - 35132368
Alignment:
Q  266 ttttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  35132406 ttttgacatgtttggatgttatcaattagaattgatttt 35132368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 43987693 - 43987648
Alignment:
Q  259 aaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||| |||||||||||||||||||||||  |||| ||||||||||    
T  43987693 aaattgattttgacatgtttggatgttcttgagtacaattgatttt 43987648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 48089887 - 48089854
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaatt 242  Q
    |||||||| |||||||||||||||||||||||||    
T  48089887 tatgtttgttttcacttttggaggagtcaaaatt 48089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 51965676 - 51965623
Alignment:
Q  204 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgta 257  Q
    ||||||||||||| ||||| |||| ||||||| ||||||| ||||||| |||||    
T  51965676 tagtgtatgtttggtttcatttttagaggagttaaaattgattctaaaagtgta 51965623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 283
Target Start/End: Complemental strand, 25129718 - 25129638
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatg 283  Q
    |||||||||||||| ||||| |||| |||| |||||||||| ||||| ||||   | |||| |||||  ||||||||||||    
T  25129718 ttagtgtatgtttggtttcaattttcgaggggtcaaaattgattctagaggttgtagaattgattttatcatgtttggatg 25129638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 54596761 - 54596805
Alignment:
Q  258 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||| ||| |||||||||||| |||| ||||||||||||||||    
T  54596761 aaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 12726 - 12403
Alignment:
Q  1 cttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcaaagtttcaatcaagggaatgaatgattccttacactgtcatgaaaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12726 cttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcacagtttcaatcaagggaatgaatgattccttacactgtcatgaaaatt 12627  T
Q  101 tacaaagcgaacaatattaatatattttagccaacaattagatgcaaccaatgaagctaacata--------------------atgtaaacgcagacac 180  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                    ||||||||||||||||    
T  12626 tacaaaacgaacaatattaatatattttagccaacaattagatgcaaccaatgaagcaaacatagacacgaacaggacactaacatgtaaacgcagacac 12527  T
Q  181 aaatttgagaaaatgaaagtgattagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12526 aaatttgagaaaatgaaagtgattactttatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaaattattttgacatgtttgg 12427  T
Q  281 atgttctcaagtagaattgatttt 304  Q
    ||||||||||||||||||||||||    
T  12426 atgttctcaagtagaattgatttt 12403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 303 - 466
Target Start/End: Complemental strand, 12341 - 12174
Alignment:
Q  303 ttccgcctcaaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcattttttgtctcacaaaaccaaacatac 402  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12341 ttccgcctctaatttattgttcaactcactttcatcagaatcaaattttatacaatcaatccattcaaaatcattttttgtctcacaaaaccaaacatac 12242  T
Q  403 aataaatgtaaccacatatgtcggtgtctgac----acgtgccttcaatctaaagtgtcggtgctaca 466  Q
    ||||||||||||||||||||||||||||||||    || |||||||||||||||||||||||||||||    
T  12241 aataaatgtaaccacatatgtcggtgtctgacatcgacatgccttcaatctaaagtgtcggtgctaca 12174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 162
Target Start/End: Complemental strand, 30598391 - 30598231
Alignment:
Q  2 ttttttcctggattcccctgtaacctaagaaaatggagaatatgcacatcaaagtttcaatcaagggaatgaatgattccttacactgtcatgaaaattt 101  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||| |||||| || |||||||| |||||||| ||||||| |||||     
T  30598391 ttttttcctggattcccctgtaacctaaacaaatggagaatatgcacatcacaatttgaatcaacggcatgaatgagtccttacattgtcatgcaaattc 30598292  T
Q  102 acaaagcgaacaatattaatatattttagccaacaattagatgcaaccaatgaagctaaca 162  Q
     || ||| |||||||||| ||||||||||||||| ||||| ||||||||||||||| ||||    
T  30598291 ccagagccaacaatattattatattttagccaactattagctgcaaccaatgaagcaaaca 30598231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 41614735 - 41614833
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||| || || || || ||||| |||||||| ||||| |||| ||||| || |||||||| |||||||||| | ||||||||||||||||||    
T  41614735 agtgtatgtttggttccatttgtgtaggagccaaaattgattctagaggtataaaa-ttgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 39648340 - 39648265
Alignment:
Q  204 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||| |||||||| || ||||||| ||||||||||||||| ||||| || ||| | |||| ||||||||||||||||    
T  39648340 tagtatatgtttggttacacttttagaggagtcaaaattgattctagagatgt-ataattgattttgacatgtttgg 39648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 13929847 - 13929808
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattg 299  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  13929847 aattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 279
Target Start/End: Original strand, 30251629 - 30251702
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttg 279  Q
    |||||||||||| || ||| |||||||||| |||||||| || || | |||| |||||||||||||| |||||||    
T  30251629 agtgtatgtttggttccacatttggaggagccaaaattgattttagatgtgt-aaaatttattttgatatgtttg 30251702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 36448006 - 36448087
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctc 288  Q
    ||||||||||| || ||||||| ||| |||| |||||| ||||||| |||| | |||| |||||||||||||||  |||||||    
T  36448006 gtgtatgtttggttccactttttgagaagtctaaattgattctaaatgtgt-agaattcattttgacatgtttgattgttctc 36448087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 40880986 - 40881088
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaa-aatttattttgacatgtttggatgttctcaagtagaattgat 301  Q
    ||||| |||||||  ||||| |||||||||||  |||||||  | || |||| || | |||| ||||||||||||||| | ||||| |||||||||||||    
T  40880986 ttagtttatgtttagtttcatttttggaggaggtaaaattgactttagaggtatatagaattgattttgacatgtttgcaagttctaaagtagaattgat 40881085  T
Q  302 ttt 304  Q
    |||    
T  40881086 ttt 40881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 36448003 - 36447966
Alignment:
Q  267 tttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  36448003 tttgacatgtttggatgttctcgggtagaattgatttt 36447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 11038076 - 11038155
Alignment:
Q  208 gtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctc 288  Q
    |||| |||| ||| |||||| || ||| |||||||| ||||| |||| || || || ||||||||||||||||||||||||    
T  11038076 gtatatttgttttaactttttgacgagacaaaattgattctagaggtatataa-ttgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 34469247 - 34469291
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||    
T  34469247 aattgattttgacatgttttgatgttctcaagtataattaatttt 34469291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 41138891 - 41138847
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||| |||||||||| |||| |||| |||||||||||    
T  41138891 aatttattttgatatgtttggatattctgaagtggaattgatttt 41138847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 29240646 - 29240548
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||| || ||||||||| ||| ||||||||| ||||| |||||| |||||| ||||||||||||| |||| || ||||||||||||||||||    
T  29240646 agtgtatgtttggttccacttttgggggaatcaaaattgattctagaggtgt-aaaattgattttgacatgttaggatattttcaagtagaattgatttt 29240548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 6544695 - 6544595
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||| ||||||| |||||| ||||||||||  ||||||| ||||| |||||||||| |||||||||||| | ||  ||||| ||||||| ||||||||    
T  6544695 ttagtgaatgtttggtttcacatttggaggaggaaaaattgattctataggtgtaaaa-tttattttgacaagctttaatgttttcaagtaaaattgatt 6544597  T
Q  303 tt 304  Q
    ||    
T  6544596 tt 6544595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 304
Target Start/End: Complemental strand, 33136677 - 33136579
Alignment:
Q  204 tagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattt 303  Q
    |||||||| |||| |||||||||||||  || |||||||  ||||| ||||||| || || |||||||||||||||| || |||| |||| |||||||||    
T  33136677 tagtgtatatttggtttcacttttggaa-agccaaaattaattctagaggtgtataa-ttgattttgacatgtttggttgctctcgagtataattgattt 33136580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 34620793 - 34620851
Alignment:
Q  221 cacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||||||||||||  |||||||| |||||||||||| | |||| ||||||||||||||||    
T  34620793 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttgg 34620851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 34748230 - 34748288
Alignment:
Q  221 cacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||||||||||||  |||||||| |||||||||||| | |||| ||||||||||||||||    
T  34748230 cacttttggaggacccaaaattgattctaaaggtgt-agaattgattttgacatgtttgg 34748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 25196070 - 25196026
Alignment:
Q  258 aaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||||||||||| | |||||| || ||||||||||||||||||    
T  25196070 aaaatttattttgataggtttggttgctctcaagtagaattgatt 25196026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 26550464 - 26550508
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||||||||| ||| ||||| |||||||||||||    
T  26550464 aattgattttgacatgtttggttgtactcaactagaattgatttt 26550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 48290287 - 48290380
Alignment:
Q  210 atgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||||||||||||||||  |||||||| ||  | |||| |  ||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  48290287 atgtttgatttcacttttggaggatacaaaattgatttcataggt-tggaaattgattttgacatgtttggatgttttcaagcagaattgatttt 48290380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 45369112 - 45369151
Alignment:
Q  265 attttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  45369112 attttgagatgtttggatgttctcaagtagaattgatttt 45369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 12306626 - 12306723
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||||||| |||| | |||||   |||| | | ||| ||||||| || || |||||||||||||||| || ||||||||||||||||||||    
T  12306626 gtgtatgtttgatttccctttagaaggagcataaatggatcctagaggtgtagaa-ttgattttgacatgtttggttgctctcaagtagaattgatttt 12306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 33504599 - 33504562
Alignment:
Q  202 attagtgtatgtttgatttcacttttggaggagtcaaa 239  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  33504599 attagtgtatgtttgatttcacttttggaggaggcaaa 33504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 15050184 - 15050281
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||| || |||||| ||||||| |||||||| ||||| | ||| || |||| |||||||| ||||||| |  ||||| ||||||||||||||    
T  15050184 agtgtatgtttggttccacttt-ggaggagccaaaattgattctagaagtg-aagaattgattttgacctgtttggttactctcatgtagaattgatttt 15050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 27624939 - 27624979
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattg 243  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    
T  27624939 ttagtttatgtttggtttcacttttggaggagacaaaattg 27624979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 304
Target Start/End: Original strand, 29922783 - 29922883
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||||||||||  || ||||||| ||||||||||||||| |||||   ||||| || || |||||||||||||||| ||||||| || ||||||||||    
T  29922783 ttagtgtatgtttacttccactttttgaggagtcaaaattgattctagtagtgtagaa-ttgattttgacatgtttggttgttctcgagcagaattgatt 29922881  T
Q  303 tt 304  Q
    ||    
T  29922882 tt 29922883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 38045392 - 38045438
Alignment:
Q  258 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  38045392 aaaattgattttgacatgtttgaatgttctcaagtagaattgatttt 38045438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 304
Target Start/End: Original strand, 10898619 - 10898711
Alignment:
Q  211 tgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||||||||||| ||||||||| ||||| || |||   |||| |||||||||||||||| || |||| |||| ||||||||||    
T  10898619 tgttcgatttcacttttggaggaatcaaaattgattctagagctgt-cgaattaattttgacatgtttggttgctctcgagtaaaattgatttt 10898711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 2938086 - 2938016
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgt 276  Q
    ||||||||||| |||   ||||||||||| |||||||| ||||| ||| ||||||||| ||||||||||||    
T  2938086 gtgtatgtttggtttttattttggaggagccaaaattgattctagaggagtaaaaattgattttgacatgt 2938016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 1105384 - 1105428
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||| ||||| |||||||||||||||||||||||    
T  1105384 aattgattttgacatttttggctgttctcaagtagaattgatttt 1105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 10860013 - 10859919
Alignment:
Q  207 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||||||| || |||||||||| ||| |||||||  || || ||||||| ||||  |||||||| |||||| ||||||||  ||||||||||||    
T  10860013 tgtatgtttggttccacttttggaagaggcaaaattcattatagaggtgtagaaatg-attttgacctgtttgaatgttctcgggtagaattgatt 10859919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 12208983 - 12208944
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattg 299  Q
    |||| |||||||||||||||||||||||| ||||||||||    
T  12208983 aattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 6622174 - 6622243
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttg 279  Q
    |||||||||||||| |||||||||||| ||||||  ||||||| |||| | |||||||| | |||||||||    
T  6622174 tatgtttgatttcatttttggaggagttaaaattaattctaaatgtgt-agaatttattctaacatgtttg 6622243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 11912005 - 11911905
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||| ||||||||| ||| | |||||| || |||||||||| ||||| || ||||||| || |||||||| ||||| | |||  | ||||||||||||||    
T  11912005 ttagagtatgtttggttttaattttggtggggtcaaaattgattctagagatgtaaaa-ttgattttgacttgtttagttgtgttaaagtagaattgatt 11911907  T
Q  303 tt 304  Q
    ||    
T  11911906 tt 11911905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 2973454 - 2973352
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaa---aatttattttgacatgtttggatgttctcaagtagaattgat 301  Q
    |||||||||||| || ||||||| |||||| |||||||| ||||||| || || |   |||| |||||||||| ||||| || ||||||| | |||| ||    
T  2973454 agtgtatgtttgcttccacttttagaggagccaaaattgattctaaaagtatagaattaattgattttgacatatttggttgctctcaagcataattaat 2973355  T
Q  302 ttt 304  Q
    |||    
T  2973354 ttt 2973352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 17862468 - 17862512
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| ||||| |||| |||| ||||||||||||||||||||||||    
T  17862468 aattaattttaacatatttgaatgttctcaagtagaattgatttt 17862512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 29922575 - 29922615
Alignment:
Q  264 tattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||||||||  ||||||| |||||||||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgatttt 29922615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 35139052 - 35139024
Alignment:
Q  309 ctcaaatttattgttcaactcactttcat 337  Q
    |||||||||||||||||||||||||||||    
T  35139052 ctcaaatttattgttcaactcactttcat 35139024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 32088763 - 32088667
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattttcc 306  Q
    ||||||||||| ||| ||||||| ||||||| ||  ||||  | |||||||| || |||||||||||||||| || ||||||||||||||||||||||    
T  32088763 tatgtttgattccacgtttggagcagtcaaagttaattctggacgtgtaaaa-ttgattttgacatgtttggttgctctcaagtagaattgattttcc 32088667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 18325281 - 18325187
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||| || |||||||||||||| ||||| || ||| | | ||| || |||| |||||||||||||||||| ||||| |||||||||||||||    
T  18325281 tatgtttgtttccacttttggaggagacaaaagtgattccagatgtg-aagaattgattttgacatgtttggattttctcgagtagaattgatttt 18325187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 48635386 - 48635287
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||||  |  |||||||||||   |||||||| |||| |||||| | || || | | ||||||||||||||||||||||||||||||| ||||    
T  48635386 agtgtatgtttggatctacttttggagggtacaaaattgattctcaaggtgaagaatttgactatgacatgtttggatgttctcaagtagaattggtttt 48635287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 15452429 - 15452475
Alignment:
Q  258 aaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  15452429 aaaattgattttgacatctttggatgttctcgagtagaattgatttt 15452475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 6021695 - 6021793
Alignment:
Q  207 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgt--aaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||| || |||||||||||||||  |||||| ||||| ||||||  || |||| ||||||||| |||||  || | ||||||||||||||||||    
T  6021695 tgtatgtttggttccacttttggaggagt-taaattgattctagaggtgtagaataattgattttgacaagtttgattgatttcaagtagaattgatttt 6021793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 15478194 - 15478108
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagta 293  Q
    ||||||||||| || |||||||||||||| |||| ||| || ||  |||||| || || |||||||||||||||| || |||||||||    
T  15478194 gtgtatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaa-ttgattttgacatgtttggttgctctcaagta 15478108  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 31375227 - 31375266
Alignment:
Q  295 aattgattttccgcctcaaatttattgttcaactcacttt 334  Q
    ||||||||||| ||||||||||||||||||||||| ||||    
T  31375227 aattgattttcagcctcaaatttattgttcaactcgcttt 31375266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 8381892 - 8381949
Alignment:
Q  222 acttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||| ||||||||||||||||| ||||| |||| | |||||| ||||||||||||||||    
T  8381892 acttctggaggagtcaaaattgattctagaggtat-aaaattgattttgacatgtttgg 8381949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 41516883 - 41516976
Alignment:
Q  210 atgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||| || |||||||||||||||||||||   ||||| |||||| | |||| ||| |||||| || | ||||| || |||||||||||||||    
T  41516883 atgtttggttccacttttggaggagtcaaaatccattctagaggtgt-agaattgattatgacatcttggaatgttttcgagtagaattgatttt 41516976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 303
Target Start/End: Complemental strand, 49079408 - 49079311
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgattt 303  Q
    ||||||||||||||| |||||||||||   ||||||| | ||| | ||||||| |  || |||||||||||||||| | ||||  ||||||||||||||    
T  49079408 agtgtatgtttgattccacttttggagtgctcaaaatcgattccagaggtgtagag-ttgattttgacatgtttggttcttctagagtagaattgattt 49079311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 51158554 - 51158510
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||| |||||||||||||||||   |||||||||||||    
T  51158554 aatttattttggcatgtttggatgttctcggatagaattgatttt 51158510  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 41037147 - 41037049
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||  ||||| ||||||||||| |||||||||| || ||||||| ||| || ||||| | || |||| ||||||||||||| |||| |||||    
T  41037147 agtgtatgtttactttcatttttggaggagacaaaattgttactgaaggtgt-aaacttgattttcatatatttgaatgttctcaagtaaaattaatttt 41037049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 37561599 - 37561695
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    ||||||||||| ||||| ||||||| ||| |  ||||| ||||| |||||| |||||| ||||||||||||||| || | |||||||||| ||||||||    
T  37561599 gtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgt-aaaattgattttgacatgtttgaat-tcctcaagtagatttgatttt 37561695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 384
Target Start/End: Complemental strand, 38129509 - 38129420
Alignment:
Q  295 aattgattttccgcctcaaatttattgttcaactcactttca-tcagaatcaaattttatacaatcaatccattcaaaatcattttttgtc 384  Q
    ||||||||||  ||||||||||||||||||| |||||||| | | ||||||  |||||| | ||||||| |||||||||||| ||||||||    
T  38129509 aattgatttttagcctcaaatttattgttcatctcacttttagttagaatc-cattttacagaatcaattcattcaaaatcaatttttgtc 38129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 7629751 - 7629827
Alignment:
Q  203 ttagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||||||||||||| || |||||||||||||| ||| |||| ||||| |||||| | |||| |||||| |||||||||    
T  7629751 ttagtgtatgtttggttccacttttggaggagccaagattgattctagaggtgt-agaattgattttgtcatgtttgg 7629827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 15221029 - 15220933
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    ||||||||||||||| |||||||| |||||  ||||||| ||||| || | | |||||| ||||||| ||| |||| || |||||| |||||||||||    
T  15221029 agtgtatgtttgattccacttttgaaggagggaaaattgattctagagatat-aaaattaattttgaaatgcttggttgctctcaaatagaattgatt 15220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 39702567 - 39702527
Alignment:
Q  265 attttgacatgtttggatgttctcaagtagaattgattttc 305  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  39702567 attttgacatgtttgtatgttctcgagtagaattgattttc 39702527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 282
Target Start/End: Original strand, 43717235 - 43717309
Alignment:
Q  207 tgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggat 282  Q
    |||| ||||| ||||||||||||||| || ||||||| ||||| | |||| | |||| ||||||||||||||||||    
T  43717235 tgtacgtttggtttcacttttggaggtgttaaaattgattctagatgtgt-agaattgattttgacatgtttggat 43717309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 302
Target Start/End: Original strand, 9943318 - 9943410
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatt 302  Q
    |||||||| || ||| ||||||| |  |||||||| |||| ||||||||||| || ||||| |||||||||| || |||||  |||||||||||    
T  9943318 tatgtttggttccacatttggagcaaccaaaattgattctgaaggtgtaaaa-ttgattttaacatgtttggttgctctcacttagaattgatt 9943410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 4778445 - 4778481
Alignment:
Q  206 gtgtatgtttgatttcacttttggaggagtcaaaatt 242  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  4778445 gtgtatgtttgatttcatttttgaaggagtcaaaatt 4778481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 7630361 - 7630405
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||||||||| || | ||||||||||||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgatttt 7630405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 14577950 - 14577907
Alignment:
Q  234 gtcaaaattgtttctaaaggtgtaaaaatttattttgacatgttt 278  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  14577950 gtcaaaattgtttttaaaggtgt-aaaattaattttgacatgttt 14577907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 280
Target Start/End: Complemental strand, 50375644 - 50375572
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttgg 280  Q
    |||||||||||||||  ||||||||| |||||||||||| || || ||||||| ||   |||||||||||||||||    
T  50375644 agtgtatgtttgattctacttttggatgagtcaaaattgattttagaggtgtataa---tattttgacatgtttgg 50375572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 2635054 - 2635152
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||||||| |||||||||| ||||   |||||||| ||||| | |||| |||||| |||||||||||||||  || | | |||||||| |||||||    
T  2635054 agtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgt-aaaattgattttgacatgtttgattgcttttaagtagaactgatttt 2635152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 41058821 - 41058915
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||||||| || ||||||| || ||| | |||||| ||||||||| ||| || || ||| ||||||||||||||||| || |||| ||||||||||    
T  41058821 tatgtttggttccacttttagatgagcctaaattgattctaaaggagtagaa-ttgattgtgacatgtttggatgttttcgagtaaaattgatttt 41058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 29468829 - 29468736
Alignment:
Q  202 attagtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatttattttgacatgtttggatgttctcaagtagaa 296  Q
    |||||||||||||| |||  ||| ||||||||   ||||||| || || ||||||| || ||  | |||||||||||||||||||||||||||||    
T  29468829 attagtgtatgtttaattcgactcttggaggaagaaaaattgattttacaggtgtagaa-ttagtattgacatgtttggatgttctcaagtagaa 29468736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 37339363 - 37339309
Alignment:
Q  209 tatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtgtaaaaatt 263  Q
    ||||||||||||||||||| |||| |||||||||  ||||| |||| ||||||||    
T  37339363 tatgtttgatttcacttttagaggggtcaaaatttattctagaggtataaaaatt 37339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 47596490 - 47596440
Alignment:
Q  205 agtgtatgtttgatttcacttttggaggagtcaaaattgtttctaaaggtg 255  Q
    ||||||||| || |||||||||||||||| ||||||||| || ||||||||    
T  47596490 agtgtatgtatggtttcacttttggaggaatcaaaattgattttaaaggtg 47596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 2171732 - 2171772
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattga 300  Q
    ||||| ||||||||||||||||||||||| |||| ||||||    
T  2171732 aatttcttttgacatgtttggatgttctcgagtaaaattga 2171772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 9082962 - 9082918
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| ||| ||||||||||||||||||| || |||||||||||||    
T  9082962 aattaattctgacatgtttggatgttctgaaatagaattgatttt 9082918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 22250171 - 22250215
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| ||| |||||||||||| ||||||||| |||||||||||||    
T  22250171 aattcattctgacatgtttggttgttctcaattagaattgatttt 22250215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 25318992 - 25319036
Alignment:
Q  260 aatttattttgacatgtttggatgttctcaagtagaattgatttt 304  Q
    |||| |||||||||||||||| || |||| |||||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgatttt 25319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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