View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_low_7 (Length: 409)
Name: NF11283_low_7
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 27144564 - 27144187
Alignment:
| Q |
16 |
agagtgaaaacggaaagaaacagctacgactaatttatttttctcttatttgctgacgtgttgttcggtggttggataagaaagtaaaagttgttacttt |
115 |
Q |
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| T |
27144564 |
agagtgaaaacggaaagaaacagctacgactaatttatttttctcttatttgctgacgtgtcgttcggtggttggataagaaagtaaaagttgttacttt |
27144465 |
T |
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| Q |
116 |
tttaggatgggagaggttgaagcttattactgactgcaaccaccagccaacaaaaatgaacagcctgtttacgaagaataataattgatatgttcaagat |
215 |
Q |
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| T |
27144464 |
tttaggatgggagaggttgaagcttattactgactgcaaccaccagccaacaaaaatgaacagcctgtttacgaagaataataattgatatgttcaagat |
27144365 |
T |
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| Q |
216 |
tcggctctttattagaagaagaatatgtgtatatttggatgttgatacaaaaataggatatagactacaagaatttatgaggactatgatgatagagacg |
315 |
Q |
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| T |
27144364 |
tcggctctttattagaacaagaatatgtgtatatttggatgttgatacaaaaataggatatagactacaagaatttatgaggactatgatgatagagact |
27144265 |
T |
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| Q |
316 |
ttgccttgacaacatcgtgattaatttcttgtgtggtattcttttttatttgcttgaaggaatgatgtattggtgatt |
393 |
Q |
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| T |
27144264 |
ttgccttgacaacatcgtgattaatttcttgtgtggtattcttttttatttgcttcaaggaatgatgtattggtgatt |
27144187 |
T |
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