View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11283_low_8 (Length: 364)
Name: NF11283_low_8
Description: NF11283
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11283_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 357
Target Start/End: Complemental strand, 34437433 - 34437083
Alignment:
| Q |
7 |
gtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgacttacattcaataatttaattttcttaaatgattaccaa |
106 |
Q |
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| T |
34437433 |
gtgtctagtgtctaacatgtatttgtctcatacaccaacatgctaccgacacatgtgttgacttacattcaataatttaattttcttaaatgattaccaa |
34437334 |
T |
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| Q |
107 |
tgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaaa |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437333 |
tgtctacgtattagtgtcatgtccgatgtgactcataggataatactgtgatattgcagttgagtttgaatagctctggagcagtagcttcagttccaag |
34437234 |
T |
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| Q |
207 |
ttcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattgat |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34437233 |
ttcatcattctttggaaccagcttaaagaaagttacctcgaggttaccaaacacaaaggtttcatctggaagattcaaaattgttgctgctgagattaat |
34437134 |
T |
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| Q |
307 |
gaaagcaagcaaactgacaaagacaaatggagaggtttggcctatgctact |
357 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
34437133 |
gaaagcaagcaaactgacaaagacagatggagaggtttggcctatgatact |
34437083 |
T |
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