View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_11 (Length: 451)
Name: NF11284_high_11
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Original strand, 41424261 - 41424679
Alignment:
| Q |
16 |
acccttatttaatggtaaacagatgtgaaaagcacaaacagataacacatgatatatttgatcacgttgttcagtcaattgtgcttatgtctgtgac-gc |
114 |
Q |
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| T |
41424261 |
acccttatttaatggtaaacagatgtgaaaagcacaaacagataacacatgatatatttgatcacgttgttcagtcaattgtgcttatgtctgtgactgc |
41424360 |
T |
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| Q |
115 |
aaaacnnnnnnnnattcaatcttatggtttatatattacaatttttgtttaaatactacggtccagttaacataagctaaactagagatagtgttgaact |
214 |
Q |
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| T |
41424361 |
aaaacttttttt-attcaatcttatggtttatatattacaatttatgtttaaatactacggtccagttaacataagctaaactagagatagtgttgaact |
41424459 |
T |
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| Q |
215 |
gtgtttccacttacgtaatgttattatgttgcaacttgaattcatcgcttgtgcgaataatctcaggcagaggagatttatacaggagctgtaagagaag |
314 |
Q |
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| T |
41424460 |
gtgtttccacttacgtaatgttattatgttgcaacttgaattcatcgcttgtgcgaataatctcaggcagaggagatttatacaggagctgtaagagaag |
41424559 |
T |
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| Q |
315 |
tgaaggaagaaactggggtaagctagatttaactttgagatattcttaagttttgatgtaaattaaattaaaaagccttatattgaacttattcataagg |
414 |
Q |
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| T |
41424560 |
tgaaggaagaaactggggtaagattgatttaactttgagataatcttaagttttgatgtaaattaaattaaaaagccttatattgaacttattcataagg |
41424659 |
T |
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| Q |
415 |
ttgcatgataggtttcgatt |
434 |
Q |
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| T |
41424660 |
ttgcatgataggtttcgatt |
41424679 |
T |
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Back To:
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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 10842626 - 10842677
Alignment:
| Q |
128 |
attcaatcttatggtttatatattacaatttttgtttaaatactacggtcca |
179 |
Q |
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| T |
10842626 |
attcaagcttaggatttacatattacaatttgtgtttaaatactacggtcca |
10842677 |
T |
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