View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_12 (Length: 401)
Name: NF11284_high_12
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 46751678 - 46752030
Alignment:
| Q |
28 |
taccttataatcatcataacctcattgaatcgaaaaacatatgttccaattgatgttgttggtctactaggatgcctgtctattctataatctataggtg |
127 |
Q |
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| T |
46751678 |
taccttataatcatcataacctcattgaatcgaaaaacatacgttccaattgatgttgttggtctactaggatg----tctattctataatctaaaggtg |
46751773 |
T |
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| Q |
128 |
gaagaaaatgatacgaagacttagcacattctaaaatgtaggaccacttgttctactctttaaatatagaattaccatatatggcccaattctctatcgt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46751774 |
gaagaaaatgatacgaagacttagcacattctaaaatgtaggaccacttgttctactctttaaatatagaattaccatatatggcccaattctctatcgt |
46751873 |
T |
|
| Q |
228 |
ttttgtaacgattccttatctttatgagtttatttggaaaattcaatggacccctctttcttccttattgtctcagaaatcattccctaaaacccacatt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46751874 |
ttttgtaacgattccttatctttatgagtttatttggaaaattcaatggacccctctttcttccttattgtctcagaaatcattccctaaaacccacatt |
46751973 |
T |
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| Q |
328 |
caacgacgcataaacgttataaaattcctactgaaagcaaaagcaaaagcaaaacat |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46751974 |
caacgacgcataaacgttataaaattcctactgaaagcaaaagcaaaagcaaaacat |
46752030 |
T |
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