View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_15 (Length: 335)
Name: NF11284_high_15
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 335
Target Start/End: Original strand, 23931624 - 23931936
Alignment:
| Q |
14 |
agatgctggataaaaagctgttgaagtgataaaatattgaggatagaattagacataaattttatttgttcagtctcaaaatttcacttctctagtttta |
113 |
Q |
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| T |
23931624 |
agatgctggataaaaagctgttgaagtgataaaatattgaggatagaattagacataaattttatttgttcagtctcaaaatttcatttctctagtttta |
23931723 |
T |
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| Q |
114 |
taatagttctataatgatagatattaaaagaaaatgtccaaaagtcttaattcaacgcgcaaaaatatcaaaatcgcttagctggacaatatgatctag- |
212 |
Q |
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| T |
23931724 |
taatagttctataatgatagatattaaaagaaaatgtccaaaagtctcaattcaacacgcaaaaatatcaaaattgcttagtcggacaatgtgatccaga |
23931823 |
T |
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| Q |
213 |
gtcagaaccttgacttggttctgactcatccacttatacacttggtcatttcgtctatcttcc-nnnnnnnntattcacaggagatagaggagagagt-a |
310 |
Q |
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||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||| || ||| |||||||| |||||| ||| | |
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| T |
23931824 |
gtcagaacc-----------ctgactcctccacttatgcacgtggtcatttcgtctatcttccaaagaaagatactcaaaggagata-aggagaaagtaa |
23931911 |
T |
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| Q |
311 |
aagatgtagtactaaccagcaccac |
335 |
Q |
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||||||||||||||||||||||||| |
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| T |
23931912 |
aagatgtagtactaaccagcaccac |
23931936 |
T |
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