View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_23 (Length: 228)
Name: NF11284_high_23
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 4246000 - 4245884
Alignment:
| Q |
92 |
aggacaacttcaaggaaagcagacagaaaagcttcaccaacaacagccatgaatgatcacgatcaaaaagataattgaagtgatgagattggaatataag |
191 |
Q |
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| T |
4246000 |
aggacagcttcaaggaaagcagacagaaaagcttcaccaacaacagccatgaatgatcacgatcaaaaatataattgaagtgatgagattggaatataa- |
4245902 |
T |
|
| Q |
192 |
agagaaacgcactaaggtc |
210 |
Q |
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| T |
4245901 |
-gagaaacgcactaaggtc |
4245884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4253107 - 4252979
Alignment:
| Q |
1 |
ataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgagccggtcgaggacaact |
100 |
Q |
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|||||||||||||||||||||||| |||| |||| |||||| ||||| ||| | || ||| |||| |||| ||||||||||||| ||||||||||||| |
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| T |
4253107 |
ataaagagtgttcttcaacctttggaccaaattgacgtcaactttcttcccacggatcaagacaacaacctcaggagaagcgagcctgtcgaggacaact |
4253008 |
T |
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| Q |
101 |
tcaaggaaagcagacagaaaagcttcacc |
129 |
Q |
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|||| ||||||||||||||| |||||||| |
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| T |
4253007 |
tcaatgaaagcagacagaaatgcttcacc |
4252979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4306531 - 4306665
Alignment:
| Q |
1 |
ataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgagccggtcgaggacaact |
100 |
Q |
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| T |
4306531 |
ataaagagtgttcttcaacctttgaaccaagttgacgtcaactttcttcccacggatcaagtcaacaacctcaggagaagcaagcctgtcgaggacaact |
4306630 |
T |
|
| Q |
101 |
tcaaggaaagcagacagaaaagcttcaccaacaac |
135 |
Q |
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| T |
4306631 |
tcaatgaaagcggacagaaatgattcacccacaac |
4306665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 4315393 - 4315527
Alignment:
| Q |
1 |
ataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgagccggtcgaggacaact |
100 |
Q |
| |
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|||||||||||||||||||||||| | || |||| | |||| ||||| ||| | || |||||||| |||| ||||||| ||| ||| ||||||||| |
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| T |
4315393 |
ataaagagtgttcttcaacctttggatcaaattgacggcaactttcttcccacggatcaagtcaacaacctcaggagaagaaagcttgtcaaggacaact |
4315492 |
T |
|
| Q |
101 |
tcaaggaaagcagacagaaaagcttcaccaacaac |
135 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||| |
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| T |
4315493 |
tcaatgaaagcagacaaaaaagcttcaccaacaac |
4315527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 4309409 - 4309541
Alignment:
| Q |
1 |
ataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgagccggtcgaggacaact |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||| ||| ||| || || ||| | || ||||||| ||||| |||||||| |||| ||| ||||||||| |
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| T |
4309409 |
ataaagagtgttattcaacctttgaaccaaattgatgtaaacttttttcccatggatgaagtcaagaacctgaggagaagccagcctgtcaaggacaact |
4309508 |
T |
|
| Q |
101 |
tcaaggaaagcagacagaaaagcttcaccaaca |
133 |
Q |
| |
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|||| || ||| |||||||||||||||||| |
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| T |
4309509 |
tcaattaataaagatagaaaagcttcaccaaca |
4309541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 41932527 - 41932395
Alignment:
| Q |
1 |
ataaagagtgttcttcaacctttgcaccagattgctgtcaaccttctttccaagaataaagtcaaccacctgtggagaagcgagccggtcgaggacaact |
100 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| ||||| ||| | || ||||||| |||| |||||||| |||| ||| ||||||||| |
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| T |
41932527 |
ataaagagtgttcttcaacctttggatcaaattgacgtcaactttcttcccacgtatcaagtcaataacctcaggagaagcaagcctgtcaaggacaact |
41932428 |
T |
|
| Q |
101 |
tcaaggaaagcagacagaaaagcttcaccaaca |
133 |
Q |
| |
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|||| |||||| |||||||| |||||||||||| |
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| T |
41932427 |
tcaatgaaagctgacagaaatgcttcaccaaca |
41932395 |
T |
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