View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_24 (Length: 225)
Name: NF11284_high_24
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 8688022 - 8688154
Alignment:
| Q |
77 |
ttggtcaaaactgcacatgcattaaacatatctattttgtttcttttattttctgtttggcccatgttgcctttattcaagtgcattatgcgtgcaatga |
176 |
Q |
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| T |
8688022 |
ttggtcaaaactgcacatgcattaaacatatctatcttgtttattttcttttcttcttggcccatgttacctttattcaagtgcattatgcgtgcaatga |
8688121 |
T |
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| Q |
177 |
gttgcactaagcatgaagtgaaatccatattat |
209 |
Q |
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| T |
8688122 |
gttgcaccaagcatgaagtgaaatccatattat |
8688154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 8674415 - 8674303
Alignment:
| Q |
76 |
tttggtcaaaactgcacatgcattaaacata--tctattttgtttcttttattttctgtttggcccatgttgcctttattcaagtgcattatgcgtgcaa |
173 |
Q |
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| T |
8674415 |
tttggtcaaaaccgcacatgcattaaacataaatctattttgtttcttt-------------gcccatgttgcctttattcaagtgcattatgcgtgaaa |
8674329 |
T |
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| Q |
174 |
tgagttgcactaagcatgaagtgaaa |
199 |
Q |
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| T |
8674328 |
tgagttgcactaagcatgaagtgaaa |
8674303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 8687976 - 8688012
Alignment:
| Q |
17 |
tggatgaaaaagctaacggggatgtgctacttatata |
53 |
Q |
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| T |
8687976 |
tggatgaaaatgctaacggggatgtgctgcttatata |
8688012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 8696635 - 8696723
Alignment:
| Q |
108 |
ctattttgtttcttttattttctgtt-tggcccatgttgcctttattcaagtgcattatg-cgtgcaatgagttgcactaagcatgaag |
194 |
Q |
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| T |
8696635 |
ctattttgtttcttttctttgctgtaattgtccatgttgcttttattgaagtccattattacgtgcaatgagttgcgctaagcaagaag |
8696723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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