View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_4 (Length: 568)
Name: NF11284_high_4
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 222 - 558
Target Start/End: Original strand, 40292009 - 40292345
Alignment:
| Q |
222 |
ggctcaaggagggacagaaattgaatttaagaaagtaacaacaaaaattgcattagagaaacagaaacaaactacacaccaggtaccatggaacctcttt |
321 |
Q |
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| T |
40292009 |
ggctcaaggagggacagaaattgaatttaagaaaataacaacaaaaattgcattagagaaacagaaacaaactacacaccaggtaccatggaacctcttt |
40292108 |
T |
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| Q |
322 |
tggaatcgatgatatgagcctagaaggttgtgtccatgaaaaaacatcattcttgtcaaaaaagggatcagcataattgcatgtctatttgtgctcaata |
421 |
Q |
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| T |
40292109 |
tggaattgatgatatgagcctagaatgctgtgtccatgaaaaaacatcattcttgtcaaaaaaggaatcagcataactgcatgtctttttgtgctcaata |
40292208 |
T |
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| Q |
422 |
gcacactcgcatttctcttttcgctcaatctttttaagataatgttcctccacctaaaaagaaaagtagaaaacaggtgcagtattagttgcaaagggct |
521 |
Q |
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| T |
40292209 |
gcacactcgcatttctcttttcgctcaacctttttaagataatgttcctctacctaaaaagaaaattagaaaacaggtgcagtattagttgcaaagggct |
40292308 |
T |
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| Q |
522 |
aaaatgaaagtgattattcatgctcgtcagaaattga |
558 |
Q |
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| T |
40292309 |
aaaatgaaagtgattattcatgctcgtcagaaattga |
40292345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 40291787 - 40291909
Alignment:
| Q |
18 |
ctaacaatctcaccttttcatcttcgagatagctcgatatttcagacggctcaaattttgatcctacagcaggtaatacaaaatcagtggcaccacatgc |
117 |
Q |
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| T |
40291787 |
ctaacaatctcaccttttcatcttcgagatagctcgatatttcagacggctcaaattttgatccttcagcaggtaatacaaaatcagtggcaccacatgc |
40291886 |
T |
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| Q |
118 |
acacgatcagtcccgtcatcctt |
140 |
Q |
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| T |
40291887 |
acacgatcagtcccgtcatcctt |
40291909 |
T |
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