View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_high_8 (Length: 511)
Name: NF11284_high_8
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_high_8 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 12 - 492
Target Start/End: Original strand, 3998 - 4477
Alignment:
| Q |
12 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcat |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3998 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggg-atcat |
4096 |
T |
|
| Q |
112 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagat |
4196 |
T |
|
| Q |
212 |
gcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatatttta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4197 |
gcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatgcaatatttta |
4296 |
T |
|
| Q |
312 |
tggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297 |
tggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatat |
4396 |
T |
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| Q |
412 |
atttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtt |
492 |
Q |
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| T |
4397 |
atttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtt |
4477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 3619 - 3687
Alignment:
| Q |
22 |
atggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
89 |
Q |
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|||||||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
3619 |
atggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 315
Target Start/End: Complemental strand, 35774468 - 35774168
Alignment:
| Q |
26 |
aaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgaggggatcatcatacaa |
118 |
Q |
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||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |
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| T |
35774468 |
aaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggtggatcatcatacaa |
35774369 |
T |
|
| Q |
119 |
taatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattttgttgagatg---- |
212 |
Q |
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||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
35774368 |
taatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattttgttgagatgcgac |
35774269 |
T |
|
| Q |
213 |
--caacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatatttt |
310 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| |||||| |||||||||| |
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| T |
35774268 |
atcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaactataagcaatatttt |
35774173 |
T |
|
| Q |
311 |
atggg |
315 |
Q |
| |
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|||| |
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|
| T |
35774172 |
ctggg |
35774168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 35848262 - 35848122
Alignment:
| Q |
13 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
105 |
Q |
| |
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|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
35848262 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
35848163 |
T |
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| Q |
106 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
146 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||| |
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| T |
35848162 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 35865934 - 35865814
Alignment:
| Q |
12 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgagg |
104 |
Q |
| |
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||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | |
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| T |
35865934 |
agaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttggga |
35865835 |
T |
|
| Q |
105 |
ggatcatcatacaataatttc |
125 |
Q |
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||||||||||||| ||||||| |
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| T |
35865834 |
ggatcatcatacattaatttc |
35865814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 1 - 141
Alignment:
| Q |
13 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
105 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
1 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
100 |
T |
|
| Q |
106 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
146 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||| |
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| T |
101 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
18 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
90 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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|
| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
18 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
90 |
Q |
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||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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|
| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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