View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_10 (Length: 464)
Name: NF11284_low_10
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 38142795 - 38142360
Alignment:
| Q |
20 |
aagagctcagtcaaatgcagctgcatatgctattcctttactgcagaacttaatccaatttggtccggttctattttttgagaaggcggaatttatattg |
119 |
Q |
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| T |
38142795 |
aagagatcagtcaaatgcagctgcatatgctattcctttactgcagaacttaatccaatttggtccggttctattttttgagaaggcggaatttatattg |
38142696 |
T |
|
| Q |
120 |
gtgatgatcgtcaagcgtggtaacaatatgagacagtgtgttcgaaatcaaggtaagattacactcgaggcgaaccaaggtaannnnnnngtttatttat |
219 |
Q |
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| T |
38142695 |
gtgatgatcgtcaagcgtggtaacaatatgagacagtgtgttggaaatcaaggtaagattacactcgaggcgaaccaaggtaatttttttgtttatttat |
38142596 |
T |
|
| Q |
220 |
gttttcacatttatctatctgacaacctaaaatgtttaaatcatctaattaa-tcacttatagattgattatgtcaattcataattgattaattaattag |
318 |
Q |
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| T |
38142595 |
gttttcacatttatctatccgacaacctaaaatgtttaaatcatctaattaaatcacttatagattgattatgtcaattcataattgattaattaattag |
38142496 |
T |
|
| Q |
319 |
acacttgagtctaatgatgcagattattaaatatgtttaaaccaagtaacattatgttttatactcatgctgatcaggttgtctcaactgatcctaatcc |
418 |
Q |
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| T |
38142495 |
acacttgagtctaatgatgcagattattaaatatgtttaaaccaagtaacattatgttttatactcatgctgatcaggttgtctcaactggtcctaatcc |
38142396 |
T |
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| Q |
419 |
agaatgggatgagaggtttacatacatggtcctttg |
454 |
Q |
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| T |
38142395 |
agaatgggatgagaggtttacatacatggtcctttg |
38142360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 38157216 - 38157160
Alignment:
| Q |
20 |
aagagctcagtcaaatgcagctgcatatgctattcctttactgcagaacttaatcca |
76 |
Q |
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| T |
38157216 |
aagagctcagtcaattgcagctgcagatgctattccttttctgcagtacttaatcca |
38157160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 38157099 - 38157054
Alignment:
| Q |
116 |
attggtgatgatcgtcaagcgtggtaacaatatgagacagtgtgtt |
161 |
Q |
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| T |
38157099 |
attggtggtgatcgtcaagcgtggtaacaatatgagacagtctgtt |
38157054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 25189444 - 25189476
Alignment:
| Q |
282 |
attgattatgtcaattcataattgattaattaa |
314 |
Q |
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| T |
25189444 |
attgattatttcaattcataattgattaattaa |
25189476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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