View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_14 (Length: 341)
Name: NF11284_low_14
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 51045012 - 51044696
Alignment:
| Q |
18 |
gtctgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaattgcaatggatcaagatcaaatgttggcttattcattagaagt |
117 |
Q |
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| T |
51045012 |
gtctgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaattgcaatggatcaagatcaaatgttggcttattcattagaagt |
51044913 |
T |
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| Q |
118 |
gcttctgaatattcatgtgaggattctagcattaaagttctttgaggttgaggttgagacatttgacattatcattgatggtttctccttctcttccttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
51044912 |
gcttctgaatattcatgtgaggattctagcattaaagttctttgaggttgaggttgagaca-gtggcattatcattgatggtttttccttctcttccttt |
51044814 |
T |
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| Q |
218 |
acaagaagagattcattattgatcaagggtttatgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttta |
317 |
Q |
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| T |
51044813 |
acaagaagagattcattattgatcaagggtttatgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttta |
51044714 |
T |
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| Q |
318 |
tctcattatctgtgctcc |
335 |
Q |
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| T |
51044713 |
tctcattatctgttctcc |
51044696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 155 - 327
Target Start/End: Original strand, 34626305 - 34626476
Alignment:
| Q |
155 |
ttctttgaggttgaggttgagacatttgacattatcattgatggtttctccttctcttcctttacaagaagagattca---ttattgatcaagggtttat |
251 |
Q |
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| T |
34626305 |
ttctttgaggttgagagtgagacagtgg-cattatcattgatggtttttccttctcttcctttataaga---gattcaatattattgatgaagggtttat |
34626400 |
T |
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| Q |
252 |
gtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatc |
327 |
Q |
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| T |
34626401 |
gtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatc |
34626476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 34626051 - 34626105
Alignment:
| Q |
21 |
tgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaat |
75 |
Q |
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| T |
34626051 |
tgaagagaagaaatagcttgaattgtttccaaactgattctgttcaaattgtaat |
34626105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 39674782 - 39674842
Alignment:
| Q |
221 |
agaagagattcattattgatcaagggtttatgtgtagctggatcaatcccttgtttcatta |
281 |
Q |
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| T |
39674782 |
agaagagattcattattgaggaagggtttatgtgtagctggatcaatcccttgtttcatta |
39674842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 39674669 - 39674711
Alignment:
| Q |
108 |
cattagaagtgcttctgaatattcatgtgaggattctagcatt |
150 |
Q |
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| T |
39674669 |
cattaaaagtgcttctgaatattcctgtgaggattctaacatt |
39674711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 5948222 - 5948255
Alignment:
| Q |
297 |
ttgaattccaaaagttttttatctcattatctgt |
330 |
Q |
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| T |
5948222 |
ttgaattccaaaagttttttatctcattatctgt |
5948255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 43560173 - 43560249
Alignment:
| Q |
259 |
tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgtgctcc |
335 |
Q |
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| T |
43560173 |
tggatcaatcccttgctttagaagcttcttctttaaacacgaattccagaagtttttaatttcattatctgttctcc |
43560249 |
T |
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