View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_17 (Length: 314)
Name: NF11284_low_17
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 301
Target Start/End: Original strand, 47050938 - 47051223
Alignment:
| Q |
16 |
cacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47050938 |
cacattttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatcatgagataatatctcaac |
47051037 |
T |
|
| Q |
116 |
atccctaatatctttttgattttcaaagaactctggagctaaaacctgtcaacattaaaacagaacatgaatgatattaatgtaccatcgaatgcaaatc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47051038 |
atccctaatatctttttgattttcaaagaactctggagctaaaaactgtcaacattaaaacagaacatgaatgatattaatgtaccatcgaatgcaaatc |
47051137 |
T |
|
| Q |
216 |
ataacatcttacaaacttatttttggaaagatattgggtggcaaagtgcaatagacacaaattaattttgaatataaggatgtcca |
301 |
Q |
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| T |
47051138 |
ataacatcttacaaagttatatttggaaagatattgggtggcaaagtgcaatagacacaaattaattttgaatataaggatgtcca |
47051223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 48106977 - 48107110
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaacatc |
118 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||| ||| || | |||||| ||| | |||||||| |
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| T |
48106977 |
attttagaacattcataacaaattcaatttcataccaattgccaacacagcctcctaattcaataacttttacttcgtcatgagagaatgtttcaacatc |
48107076 |
T |
|
| Q |
119 |
cctaatatctttttgattttcaaagaactctgga |
152 |
Q |
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| T |
48107077 |
cctgatatctttttgattgtcaaacaactttgga |
48107110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 48105985 - 48106098
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaacatc |
118 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| | | |||||||||||| |||||||| |
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| T |
48105985 |
attttaaaacattcctaacaaactcaatttcataccaattatcaacacaacctcccaattcaataacttttacct-gtcatgagataatatttcaacatc |
48106083 |
T |
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| Q |
119 |
cctaatatctttttg |
133 |
Q |
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||||||||||||||| |
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| T |
48106084 |
cctaatatctttttg |
48106098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 48895826 - 48895690
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaacatc |
118 |
Q |
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|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||| | | | || | |||||| ||| | |||||||| |
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| T |
48895826 |
attttagaacattcataacaaactcaatttcaaaccaattgccaacacaacctcccaattcaataatcttaacttcgtcatgagagaatgtttcaacatc |
48895727 |
T |
|
| Q |
119 |
cc---taatatctttttgattttcaaagaactctgga |
152 |
Q |
| |
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|| |||||||||| ||||| |||| ||||||||| |
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| T |
48895726 |
cctcataatatctttctgattctcaagaaactctgga |
48895690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 48452901 - 48452960
Alignment:
| Q |
26 |
aacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
85 |
Q |
| |
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||||||| | |||||||||||||||||| |||||||||||||||||| |||||||||||| |
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|
| T |
48452901 |
aacattcatgacaaactcaatttcatacgaattgccaacacaacctcccaattcaataac |
48452960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 47929493 - 47929427
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataac |
85 |
Q |
| |
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|||||| ||||||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
47929493 |
attttataacattcataacaaactcaatttcaaaccaattgccaacacatcctccaaattcaataac |
47929427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 39403632 - 39403521
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaacatc |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |||| |||||| ||| |||| ||| |
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| T |
39403632 |
attttagaacattcgtaacaaactcaatttcaaaccaattgccaacacaaccttcaaattcaataacttttagctcatcatgagagaatccttcaatatc |
39403533 |
T |
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| Q |
119 |
cctaatatcttt |
130 |
Q |
| |
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|||| ||||||| |
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| T |
39403532 |
cctactatcttt |
39403521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 50460376 - 50460277
Alignment:
| Q |
19 |
attttagaacattcttaacaaactcaatttcataccaattgccaacacaacctctcaattcaataacccttatatcatgatgagataatatctcaacatc |
118 |
Q |
| |
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|||| ||| ||||| | |||||||||||||||||||||||||||||||| |||| |||||||||||| || || || | |||||| |||| |||||||| |
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| T |
50460376 |
atttcagagcattcattacaaactcaatttcataccaattgccaacacagcctcccaattcaataactctgatctcgtcatgagagcatatttcaacatc |
50460277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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