View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_27 (Length: 215)
Name: NF11284_low_27
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 42848415 - 42848620
Alignment:
| Q |
1 |
tctttttcattcttgtcgattagcaataataaatactttacattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaat |
100 |
Q |
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| T |
42848415 |
tctttttcattcttgtcgattagcaataataaatactttacattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaat |
42848514 |
T |
|
| Q |
101 |
gcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcattttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42848515 |
gcagagaaggaggattaaggatctttcaaaacgcttggaggagggcatgttaaaagcttctctcactatggttttttcttgatctcattttcattttctt |
42848614 |
T |
|
| Q |
201 |
ctcact |
206 |
Q |
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||||| |
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| T |
42848615 |
ttcact |
42848620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 42854960 - 42855156
Alignment:
| Q |
1 |
tctttttcattcttgtcgattagcaataataaatactttacattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaat |
100 |
Q |
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||||| |||||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||||| |
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| T |
42854960 |
tctttctcattcttgtcgatccgcaataatagatattttacattttaacttccagctttgtgatcttaatgcaacggcatcagcagccaattaatgaaat |
42855059 |
T |
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| Q |
101 |
gcagagaaggaggattaaggatctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcatttt |
197 |
Q |
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| T |
42855060 |
gcagaaaaggaggattaagaatctttcaaaacacttggaggagggcatgttaaaagcttctctcactatggttttttctggatctcattttcatttt |
42855156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 42860697 - 42860880
Alignment:
| Q |
24 |
caataataaatactttacattttacctt-ccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaatgcagagaaggaggattaaggat |
122 |
Q |
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|||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||||||||| ||| |
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| T |
42860697 |
caataatagatattttacattttacctttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaggattacagat |
42860796 |
T |
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| Q |
123 |
ctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcattttcttctcact |
206 |
Q |
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|||||||||||| |||| ||||| |||| |||||| ||||||| | |||||||||| |||||||||| |||||||| ||||| |
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| T |
42860797 |
ctttcaaaacgcctggacgagggcctgttcaaagctgctctcacgaaggttttttctggatctcatttcaattttcttttcact |
42860880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 42856620 - 42856803
Alignment:
| Q |
24 |
caataataaatactttacattttacctt-ccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaatgcagagaaggaggattaaggat |
122 |
Q |
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|||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||| | ||| ||||| ||| |
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| T |
42856620 |
caataatagatattttacattttacctttccagctttgtgatcttaatgcaacggcatcaacagccaattactgaaatgcagaaagggaagattacagat |
42856719 |
T |
|
| Q |
123 |
ctttcaaaacgcttggaggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcattttcttctcact |
206 |
Q |
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|||||||||||| |||| ||||| |||| |||||| ||||||| | |||||||||| |||||||||| |||||||| ||||| |
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| T |
42856720 |
ctttcaaaacgcctggatgagggcctgttcaaagctgctctcacgaaggttttttctggatctcatttcaattttcttttcact |
42856803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 42853108 - 42853274
Alignment:
| Q |
40 |
acattttaccttccagctttgtgatcttaatgcaactgcat-caacagccaactaatgaaatgcagagaaggaggattaaggatctttcaaaacgcttgg |
138 |
Q |
| |
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|||||||||||||||||| || ||| ||| |||||| |||| ||| | ||| || ||||||||||| ||||||||| ||||||||||||||| || ||| |
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| T |
42853108 |
acattttaccttccagctatgagatgttattgcaacggcatgcaata-ccagttagtgaaatgcagaaaaggaggatcaaggatctttcaaaatgcctgg |
42853206 |
T |
|
| Q |
139 |
aggagggtatgttaaaagcttctctcactatggttttttcttgatctcattttcattttcttctcact |
206 |
Q |
| |
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||||||| ||||||||| ||||||| ||| |||||||||| |||| ||| || |||||||| ||||| |
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| T |
42853207 |
aggagggcctgttaaaagattctctctctaaggttttttctggatcccatgttaattttcttttcact |
42853274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 27218 - 27350
Alignment:
| Q |
23 |
gcaataataaatactttacattttaccttccagctttgtgatcttaatgcaactgcatcaacagccaactaatgaaatgcagagaaggaggattaaggat |
122 |
Q |
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|||||||| |||| |||||||||||| || ||||| || || ||| | | || |||||| ||||||| || |||||| || | |||||||||||||||| |
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| T |
27218 |
gcaataattaatattttacattttacattgcagctgtgagacgttatttcgacggcatcagcagccaattagtgaaattcaaaaaaggaggattaaggat |
27317 |
T |
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| Q |
123 |
ctttcaaaacgcttggaggagggtatgttaaaa |
155 |
Q |
| |
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||| |||||||| |||||||||| ||||||||| |
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| T |
27318 |
cttgcaaaacgcctggaggagggcatgttaaaa |
27350 |
T |
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