View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_3 (Length: 569)
Name: NF11284_low_3
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 33236407 - 33235859
Alignment:
| Q |
1 |
agaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaactc |
100 |
Q |
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| T |
33236407 |
agaacaatgtcctgccaaacacggaatgtacatatagccacttacaaaggataaaactaggtcaatggtggaaaatatgcaaaaataacactattaactc |
33236308 |
T |
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| Q |
101 |
cctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattatc |
200 |
Q |
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| T |
33236307 |
cctatacactgccaagtgtgttccatttcaaccaccctaacaatcaatcatcatcatataatagtatatatgcaaaaccatgcaaaattatattattatc |
33236208 |
T |
|
| Q |
201 |
tagtattagatcataataactaattttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33236207 |
tagtattagatcataataactaattttcttacacattaattaatttctacactcctctatcacatatctttatctctcatttttcaattacacacctatt |
33236108 |
T |
|
| Q |
301 |
acattattttctcctcaaagtgtgattaccataaggggtgagaaattaatcatcatacacacatattttttaatgaatgattacataatagaacaagcat |
400 |
Q |
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| T |
33236107 |
acattattttctcctcaaagtgtgattaccataaggggtgagaaattaatcatcatacacacatat-ttttaatgaatgattacataatagaacaagcat |
33236009 |
T |
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| Q |
401 |
ttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcaccaacctttctaaccatattaggaggtgc |
500 |
Q |
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| T |
33236008 |
ttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcgccaacctttctaaccatattaggaggtgc |
33235909 |
T |
|
| Q |
501 |
tttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatg |
550 |
Q |
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| T |
33235908 |
tttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatg |
33235859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 40576991 - 40577034
Alignment:
| Q |
381 |
ttacataatagaacaagcatttggattttcatcactgaacattt |
424 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
40576991 |
ttacatgatagaacaagcatttggattttcatcactgaaaattt |
40577034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 38127423 - 38127463
Alignment:
| Q |
382 |
tacataatagaacaagcatttggattttcatcactgaacat |
422 |
Q |
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| T |
38127423 |
tacatgatagaacatgcatttgggttttcatcactgaacat |
38127463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 9699770 - 9699733
Alignment:
| Q |
382 |
tacataatagaacaagcatttggattttcatcactgaa |
419 |
Q |
| |
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| T |
9699770 |
tacataacagaacaagcatttggattctcatcactgaa |
9699733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 40787056 - 40787097
Alignment:
| Q |
383 |
acataatagaacaagcatttggattttcatcactgaacattt |
424 |
Q |
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|||||| |||||||||||| |||||||||||||| ||||||| |
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| T |
40787056 |
acataacagaacaagcattaggattttcatcactaaacattt |
40787097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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