View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_5 (Length: 556)
Name: NF11284_low_5
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 35074493 - 35075019
Alignment:
| Q |
11 |
cagagagatcaaggagaagcttctttttctgcttcttctcataataatcacgtttctccttctcccagtttcagcagttactcgtcggaaacactcgctg |
110 |
Q |
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| T |
35074493 |
cagagagatcaaggagaagcttctttttctgcttcttctcataataatcacgtttctccttctcccagtttcagcagttactcgtcggaaacactcgctg |
35074592 |
T |
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| Q |
111 |
aaatcgccgctagagtcatcgatgagcttcggtgggatcctcattccgacgaagacgcgctttatcaaccatgggaagacgacaacaaattgaagactca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35074593 |
aaatcgccgctagagtcatcgatgagcttcggtgggatcctcattccgacgaagacgcgctttatcaaccatgggaagacgacaacaaattgaagactca |
35074692 |
T |
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| Q |
211 |
aaacgacctcgaaaaagacgaggatagtgaatttgagtttgcggtggtttcgagggattcaacgaatttctcagtggtttccgccgatgacattttctac |
310 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35074693 |
aaacgacaacgaaaaagacgaggatagtgaatttgagtttgcggtggtttcgagggattcaacgaatttctccgtggtttccgccgatgacattttctac |
35074792 |
T |
|
| Q |
311 |
aacggtcagatcaaacctttgtattatccagtttttgatcaaaatctactaaacgacgacgatgacggtgccgtttcttccgtttcgccggttccgaacg |
410 |
Q |
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| T |
35074793 |
aacggtcagatcaaacctttgtattatccagttttcgatcaaaatctactaaacgacgacgatgacggtgtcgtttcttccgtttcgccggttccgaacg |
35074892 |
T |
|
| Q |
411 |
aaacaacaacacgacgtcgtttaccgctacgaacgctgatgtttgaagaaagcagcgaagctacggcatcgtgttcatcttcaaccgacgagagtgtcga |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35074893 |
aaacaacaacacgacgtcgtttaccgctacgaacgctgatgtttgaagaaagcagcgaagctacggcatcgtgttcatcttcaaccgacgagagtatcga |
35074992 |
T |
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| Q |
511 |
cctagaaggcgtagcggaagggagtta |
537 |
Q |
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| T |
35074993 |
cctagaaggcgtagcggaagggagtta |
35075019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 43903068 - 43903105
Alignment:
| Q |
290 |
tccgccgatgacattttctacaacggtcagatcaaacc |
327 |
Q |
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| T |
43903068 |
tccgccgatgacattttccacaacggtcagatcaaacc |
43903105 |
T |
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