View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11284_low_6 (Length: 543)

Name: NF11284_low_6
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11284_low_6
NF11284_low_6
[»] chr1 (8 HSPs)
chr1 (208-543)||(40292764-40293099)
chr1 (1-209)||(40292335-40292543)
chr1 (1-215)||(40285062-40285276)
chr1 (1-212)||(40266331-40266541)
chr1 (93-180)||(40257976-40258063)
chr1 (5-158)||(40272587-40272740)
chr1 (392-461)||(40266886-40266955)
chr1 (396-440)||(40259087-40259131)
[»] chr7 (2 HSPs)
chr7 (24-280)||(43461246-43461498)
chr7 (392-453)||(37531599-37531660)
[»] chr2 (1 HSPs)
chr2 (128-280)||(7076371-7076519)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 208 - 543
Target Start/End: Original strand, 40292764 - 40293099
Alignment:
Q  208 aagtagtaagaaagacaatgaaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgttactgctaattggaatatatatcaaagg 307  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292764 aagtagtaagaaagacgatgaaagttcatctgaactctccttcatcacaatagaaacttacatcagttatgttactgctaattggaatatatatcaaagg 40292863  T
Q  308 ggtcattgtcttatcttatgggcactgtttttgcaataaattaatagtagtatagaaagtttgaatcccttaaaaaagaaacatacatacctaggtcctt 407  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292864 ggtcattgtcttatcttaggggcactgtttttgcaataaattaatagtagtatagaaagtttgaatcccttaaaaaagaaacatacatacctaggtcctt 40292963  T
Q  408 cagctgattgacccgggtaacagatttaagaatttctgcatccctgtacaaaaataacaacgataattattataaaacattagagatggaatggcagaaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40292964 cagctgattgacccgggtaacagatttaagaatttctgcatccctgtacaaaaataacaacaataattattataaaacattagagatggaatggcagaaa 40293063  T
Q  508 gtaacagcagattgtggagataagtacatacttgtc 543  Q
    ||||||||||||||||||||||||||||||||||||    
T  40293064 gtaacagcagattgtggagataagtacatacttgtc 40293099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 40292335 - 40292543
Alignment:
Q  1 tcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292335 tcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaat 40292434  T
Q  101 tgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40292435 tgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatc 40292534  T
Q  201 aataatcaa 209  Q
    |||||||||    
T  40292535 aataatcaa 40292543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 40285062 - 40285276
Alignment:
Q  1 tcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaat 100  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||||||||  | |||| |||||| |||||||||||| || |||| | |||||||||    
T  40285062 tcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctcgcacttaattggggtttcagaaacaacgttgccagaaat 40285161  T
Q  101 tgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatc 200  Q
    || ||||| ||  |||||  ||||  ||||||  |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||  ||||    
T  40285162 tgcaacaagcaatggtaacctttcaacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaaccacagcagcacaaattgcttcatc 40285261  T
Q  201 aataatcaagtagta 215  Q
    || ||||||||||||    
T  40285262 aagaatcaagtagta 40285276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 40266331 - 40266541
Alignment:
Q  1 tcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaat 100  Q
    ||||||||||||||||||||||  |||| |||||||  ||||| ||||||||  | | || |||||| |||||||||||| || ||||    ||||||||    
T  40266331 tcagaaattgaagtctacatactgtttcttcaactacaacacctcttaaaccagtcaactcgcacttaattggggtttcagaaacaacacacccagaaat 40266430  T
Q  101 tgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatc 200  Q
    || ||||||||   || || ||||| |||||| || |||| |||||| ||| |||||| ||||  |||| |||||||  |||||| ||||||||| |||     
T  40266431 tgcaacaaccaagtgtgatctttctccatccagcaattgttctgaaacgtg-agaatctcaagtatgattagaaaccgtagcagcacaaattgcatcata 40266529  T
Q  201 aataatcaagta 212  Q
    ||||||| ||||    
T  40266530 aataatctagta 40266541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 93 - 180
Target Start/End: Original strand, 40257976 - 40258063
Alignment:
Q  93 ccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccaca 180  Q
    |||||||||| ||||||||  || ||| ||||| ||||||||||||||||||||||   ||||||||||||  |||||||||||||||    
T  40257976 ccagaaattgcaacaaccaagggaaatatttcttcatccaacagttgtgctgaaaaaacaagaatcccaaggatgatcagaaaccaca 40258063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 40272587 - 40272740
Alignment:
Q  5 aaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaattgaa 104  Q
    |||||||||| ||||||| | ||| || |||||| |||| | |||||| || | || || | | ||||||| |||| || |||||  ||||||||||| |    
T  40272587 aaattgaagtttacatactcgttcttcgactattgcacctcctaaaccactcaactcgcccgtaattggggcttcacaaacaactctgccagaaattgta 40272686  T
Q  105 acaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatc 158  Q
    |||||| | |||||| | | |||||||| ||| || ||||||||||||||||||    
T  40272687 acaaccctgggtaatatatttgcatccatcagatgagctgaaaagtgaagaatc 40272740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 40266886 - 40266955
Alignment:
Q  392 acatacctaggtccttcagctgattgacccgggtaacagatttaagaatttctgcatccctgtacaaaaa 461  Q
    |||| |||| |||| ||| || ||||||| ||||||||||||||||||||||||||| ||| || |||||    
T  40266886 acatgcctatgtccatcaacttattgacctgggtaacagatttaagaatttctgcattcctataaaaaaa 40266955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 40259087 - 40259131
Alignment:
Q  396 acctaggtccttcagctgattgacccgggtaacagatttaagaat 440  Q
    |||||| ||| |||||||||| |||||| ||||||||||||||||    
T  40259087 acctagctccctcagctgattaacccggttaacagatttaagaat 40259131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 43461498 - 43461246
Alignment:
Q  24 ctttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaattgaaacaaccataggtaattttt 123  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  43461498 ctttcgtcaactattacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacttcgtcagaaattgaaacaaccaagggtaattttt 43461399  T
Q  124 ctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatcaataatcaagtagtaagaaagac 223  Q
    | |||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||    ||||     
T  43461398 ccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaagtagt----aagat 43461303  T
Q  224 aatgaaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgtt 280  Q
    ||||||||||||||||| |||| |||||||||     ||||||||||||||||||||    
T  43461302 aatgaaagttcatctaagctctacttcatcactgcataaacttacatcagttatgtt 43461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 37531599 - 37531660
Alignment:
Q  392 acatacctaggtccttcagctgattgacccgggtaacagatttaagaatttctgcatccctg 453  Q
    |||||||||| ||||| | ||||||||||||||| ||||||||||||||||| |||||||||    
T  37531599 acatacctagctcctttaactgattgacccgggtcacagatttaagaatttccgcatccctg 37531660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 128 - 280
Target Start/End: Complemental strand, 7076519 - 7076371
Alignment:
Q  128 atccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatcaataatcaagtagtaagaaagacaatg 227  Q
    |||||||| ||||||| ||||||||| ||||| ||||||  ||||||||||| || |||||||||||||||||||||||||||||||    |||| ||||    
T  7076519 atccaacaattgtgctaaaaagtgaaaaatccaaagcgtcgtcagaaaccacggcggcccaaattgcaacatcaataatcaagtagt----aagataatg 7076424  T
Q  228 aaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgtt 280  Q
    ||| ||||||||| |||| |||||||||     ||||||||||||||||||||    
T  7076423 aaacttcatctaagctctacttcatcactgcaaaaacttacatcagttatgtt 7076371  T

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