View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11284_low_9 (Length: 470)
Name: NF11284_low_9
Description: NF11284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11284_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 4 - 454
Target Start/End: Complemental strand, 8440760 - 8440314
Alignment:
| Q |
4 |
gggggaacaatagtgattacatccactccttccaatttttgaccttccctctcctaattctctccctctctccattaaaaattacaaaaataatcaaaag |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8440760 |
gggggaacaatagtgattacatccactccttccaatttttgaccttccctctcctaattctctc--tctctccattaaaaattacaaaaataatcaaaag |
8440663 |
T |
|
| Q |
104 |
agaataagattaagaggaggatagagagccattaatcgttgtgccattgttacaactatcaccgatggccgacttcaaagttttgacaacattaaggaaa |
203 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||| |
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| T |
8440662 |
agaataagattaagagggggatagagagccattaatcgttgtgccattgttacaactattgccgatggccgacttcaaagtattgaccacattaaggaaa |
8440563 |
T |
|
| Q |
204 |
tcagcctcaaccataatgataagttaggcaaaactatgagcagattgaattgctaattgtaatccaagagcttctacaacgttagcatcagcaaggacat |
303 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8440562 |
tcaccctcaaccataatgataagttaggcaaaactatgagcaaattgaattgctaattgtaatccaagagcttctacaacgttagcatcagcaaggacat |
8440463 |
T |
|
| Q |
304 |
ctatattgttccacgtagcagctgcatgctaagacgaaaccttttaaaggaaccttagtcagtggcgaagtcaggaattttgtagaatctggataaatat |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
8440462 |
ctatattgttccacgtagcagctgcatgctaagacgaaaccttttaaaggaaccttagttagtggcgaagtcagaaattttgtagagcctggataaatat |
8440363 |
T |
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| Q |
404 |
ctatagaatatatatatgaattgttacatagagaagacacaaattgtaagt |
454 |
Q |
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||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8440362 |
ctatata--atatatatgaattgttacatagagaagacacaaattgtaagt |
8440314 |
T |
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