View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11285_high_3 (Length: 337)
Name: NF11285_high_3
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11285_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 2 - 158
Target Start/End: Complemental strand, 10588557 - 10588401
Alignment:
| Q |
2 |
taacacactacaaattcctaaccattgcaaaacacgaagctaaatgatactnnnnnnngcacatttcaagaaaaggtgattaatagactcctccatccca |
101 |
Q |
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| T |
10588557 |
taacacactacaaattcccaaccattgcaaaacacgaagctaaatgctactaaaaaaagcacatttcaagaaaaggtgattaatagactcctccatccca |
10588458 |
T |
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| Q |
102 |
cttccggcctcctaaacatgctaatgagcctaaagagggaactccaagatgaaccaa |
158 |
Q |
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| T |
10588457 |
cttccggcctcctaaacatgctaatgagcctaaagagggaactccaagatgaaccaa |
10588401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 10588404 - 10588321
Alignment:
| Q |
234 |
ccaattaatatcatgagaaggggggacaagtgggatactctaattaagtcaataagtggtgaactccttttattgaatagtcatc |
318 |
Q |
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| T |
10588404 |
ccaattaatatc-tgagaagggggaacaagtgggatactctaattaagtcaataagtggtaaactccttttactgaatagtcatc |
10588321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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