View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11285_high_5 (Length: 306)

Name: NF11285_high_5
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11285_high_5
NF11285_high_5
[»] chr6 (6 HSPs)
chr6 (16-292)||(11169878-11170154)
chr6 (16-292)||(11208700-11208976)
chr6 (26-156)||(11275272-11275402)
chr6 (87-159)||(11196117-11196189)
chr6 (114-163)||(11155697-11155746)
chr6 (110-170)||(11132411-11132471)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 11169878 - 11170154
Alignment:
Q  16 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169878 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 11169977  T
Q  116 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11169978 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataacttttaggttgtcttcagctgtggtgaatgacttttccctattg 11170077  T
Q  216 gtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggatt 292  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  11170078 gtaggaatcgtggtattcctaggaattattacgcccatgaggtcccctttcatattaattccaagggacaaaggatt 11170154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 11208700 - 11208976
Alignment:
Q  16 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||||||||||||||||| ||||||    
T  11208700 cagagacgtctaagatgccatcatcgttaatttggaagttgaccacgaatttttgatcaccttttggacatggaggaatttcaaactcaaaagatcctag 11208799  T
Q  116 caagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaataact-tttaggttgtcttcagctgtggtgaatgacttttccctatt 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||   ||| || | |||| ||| |||||  ||||   |||||| ||   | |||| ||||    
T  11208800 caagttgttgtccttagttgtttgcctctcaccctcataaacggaaattgata-aactattttggttgggttcactggtggtgtatacatcttccatatt 11208898  T
Q  215 ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggatt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11208899 ggtaggaatcgtggtattcctaggaattattacgctcatgaggccccctttgatattaattccaagggacaaaggatt 11208976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 11275272 - 11275402
Alignment:
Q  26 taagatgccatcatcgttaatttggaagttgaccacgaaatgtagaacaccttttggacgtggaggaatttcaaactcaaaagctcctagcaagttgttg 125  Q
    |||||||||||||| || |||||||||||||||||| || ||  ||||| ||  ||||| ||||||||||||||||  ||||| ||||||||||||||||    
T  11275272 taagatgccatcattgtcaatttggaagttgaccaccaattgaggaacatctactggacatggaggaatttcaaacctaaaagttcctagcaagttgttg 11275371  T
Q  126 tccttagttatttgcctctcaccctcataaa 156  Q
    ||||||||| ||| |||||||||||||||||    
T  11275372 tccttagttgttttcctctcaccctcataaa 11275402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 11196117 - 11196189
Alignment:
Q  87 ggaggaatttcaaactcaaaagctcctagcaagttgttgtccttagttatttgcctctcaccctcataaacat 159  Q
    ||||||||||| ||| ||||   ||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  11196117 ggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctctcaccttcataaacat 11196189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 11155697 - 11155746
Alignment:
Q  114 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 163  Q
    ||||||||||| ||| ||||||||| ||||||||| ||||||||||||||    
T  11155697 agcaagttgttttccctagttattttcctctcaccttcataaacatgaat 11155746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 11132411 - 11132471
Alignment:
Q  110 tcctagcaagttgttgtccttagttatttgcctctcaccctcataaacatgaatcgaaata 170  Q
    |||||||||||||||  || |||||||||  || |||||||| |||||||||||| |||||    
T  11132411 tcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaata 11132471  T

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