View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11285_high_8 (Length: 241)
Name: NF11285_high_8
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11285_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 32099276 - 32099066
Alignment:
| Q |
16 |
attttcaccctctttgccttgcttatttgtgtcacaatcatcctctttgccaacaccaccatcaacttcaccgcctctaatccaattgccttctaccccg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32099276 |
attttcaccctctttgccttgcttatttgtgtcacaatcatcctctttgccaacaccaccatcaacttcaccgcctctaatccaattgccttctaccccg |
32099177 |
T |
|
| Q |
116 |
acaacgtaaaagtgcagcaaccattcaatcaccatgatcctccagtactcacatattcaaaagatcatcaagaacaaccactagaccacgatgcgcctcc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32099176 |
acaacgtaaaagtgcagcaaccattcaatcaccatgatcctccagcactcacagattcaaaagatcatcaagaacaaccactagaccacgatgcgcctcc |
32099077 |
T |
|
| Q |
216 |
agtactcacag |
226 |
Q |
| |
|
||||||||||| |
|
|
| T |
32099076 |
agtactcacag |
32099066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 32099081 - 32099009
Alignment:
| Q |
154 |
cctccagtactcacatattcaaaagatcatcaagaacaaccactagaccacgatgcgcctccagtactcacag |
226 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
32099081 |
cctccagtactcacagattcaaaagatcatcaagaagaaccactacaccacgatgcgcctccagtacttacag |
32099009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University