View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11285_low_1 (Length: 532)

Name: NF11285_low_1
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11285_low_1
NF11285_low_1
[»] chr6 (1 HSPs)
chr6 (250-532)||(5997859-5998141)


Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 250 - 532
Target Start/End: Original strand, 5997859 - 5998141
Alignment:
Q  250 aaatttggtattctctgtcttttcttgtcgatggttgcccttagtgttacggtgttccagaactgaagaggcacattggactcactgaagaaaattcttt 349  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5997859 aaatttggtattctctgtcttttctcgtcgatggttgcccttagtgttacggtgttccagaactgaaggggcacattggactcactgaagaaaattcttt 5997958  T
Q  350 ccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatctcactagctttctttatcactcattcgtccaacatttgt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5997959 ccttgtttatggccccccttagtgttatgttgttccagatactagtaagttctcatcaatttcactagctttctttatcactcattcgtccaacatttgt 5998058  T
Q  450 tgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcct 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998059 tgtttatcaatatatgcacttcaaaatctcactttactttgtttgatttgagtgtgctagtttgtgaatttgtaacaatgcct 5998141  T

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