View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11285_low_2 (Length: 458)
Name: NF11285_low_2
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11285_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 40589770 - 40589445
Alignment:
| Q |
17 |
atttattatattatgtcatcttatttctaaaaatagttgaggcaaacagaaaaccatgatttagactcattaaaatggtgaagaaagcaaactttttgta |
116 |
Q |
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| T |
40589770 |
atttattatattatgtcatcttatttctaaaaatagttgaggcaaacagaaaaccatgatttagactcattaaaatggtgaagaaagcaaactttttgta |
40589671 |
T |
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| Q |
117 |
atgaattataagagacaaagtgacaatatatattttaagaacaaacaaaagaaatagttttttcatgcaatctgttttatttgtagtttgtgatccattc |
216 |
Q |
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| T |
40589670 |
atgaattataagagacaaagtgacaatatatattttaagaacaaacaaaagaaatagttttttcatgcaatctgttttatttgtagtttgtgatccattc |
40589571 |
T |
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| Q |
217 |
attattccatcaatcattcaaagcattattattccctcttctcctcnnnnnnngataaaagctaaagcctatacccacaccactactgtagtttcctgtc |
316 |
Q |
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| T |
40589570 |
attattccatcaatcattcaaagcattattattccctcttctcctcaaaaaaagataaaagctaaagcctatacccacaccactactgtagtttcctgtc |
40589471 |
T |
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| Q |
317 |
tattcaaacagacagacagtcctcta |
342 |
Q |
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| T |
40589470 |
tattcaaacagacagacagtcctcta |
40589445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 421 - 458
Target Start/End: Complemental strand, 40589366 - 40589329
Alignment:
| Q |
421 |
agttcagcttattcttaacaaaagtggtttattccttc |
458 |
Q |
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| T |
40589366 |
agttcagcttattcttaacaaaagtggtttattccttc |
40589329 |
T |
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