View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11285_low_7 (Length: 265)
Name: NF11285_low_7
Description: NF11285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11285_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 54376625 - 54376876
Alignment:
| Q |
1 |
acgcgccctcttcttctctgttcccaaaccagacatcttcctcttcaatgtcctcgttcgtggcttctccctcaacgattcaccttcttcttccatttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54376625 |
acgcgccctcttcttctctgttcccaaaccagacatcttcctcttcaatgtcctcgttcgtggcttctccctcaacgattcaccttcttcttccatttct |
54376724 |
T |
|
| Q |
101 |
ctgtacacccatttacgtcgaaataccaatctttcccctgataacttcacctacgctttcgccgttgccgcttgttctaatgataagcatttgatgcttc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54376725 |
ctgtacacccatttacgtcgaaataccaatctttcccctgataacttcacctacgctttcgccgttgccgcttgttctaatgataagcatttgatgcttc |
54376824 |
T |
|
| Q |
201 |
tgcatgctcattctattattgatgggtatggttctaatgtgtttgttggttc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54376825 |
tgcatgctcattctattattgatgggtatggttctaatgtgtttgttggttc |
54376876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 44530092 - 44529858
Alignment:
| Q |
1 |
acgcgccctcttcttctctgttcccaaaccagacatcttcctcttcaatgtcctcgttcgtggcttctccctcaacgattcaccttcttcttccatttct |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
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| T |
44530092 |
acgcgccctcttcttctctgttcccaaactcgacatcttcctcttcaatgtcctcgtttgtggcttctccctcaatgattcaccttcttc---catttct |
44529996 |
T |
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| Q |
101 |
ctgtacacccatttacgtcgaaataccaatctttcccctgataacttcacctacgctttcgccgttgccgcttgttctaatgataagcatttgatgcttc |
200 |
Q |
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|| |||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| |||| |||| |||||||||||||||||||||||||| |
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| T |
44529995 |
ctatacattcatttgcgtcgaaataccaatcttgcccctgataacttcacctacgattttgcctttgcagcttattctaatgataagcatttgatgcttc |
44529896 |
T |
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| Q |
201 |
tgcatgctcattctattattgatgggtatggttctaat |
238 |
Q |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
44529895 |
tgcatgctcattctattattgatggatatggttctaat |
44529858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 46035618 - 46035384
Alignment:
| Q |
1 |
acgcgccctcttcttctctgttcccaaaccagacatcttcctcttcaatgtcctcgttcgtggcttctccctcaacgattcaccttcttcttccatttct |
100 |
Q |
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|
||||||||||||||||||||||| ||||| |||||| || ||||||||||| ||||| |||||| ||||| ||| |||||||||||||| ||||||| |
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| T |
46035618 |
acgcgccctcttcttctctgttctcaaactcgacatcctcttcttcaatgtcatcgtttgtggctcctcccgcaatgattcaccttcttc---catttct |
46035522 |
T |
|
| Q |
101 |
ctgtacacccatttacgtcgaaataccaatctttcccctgataacttcacctacgctttcgccgttgccgcttgttctaatgataagcatttgatgcttc |
200 |
Q |
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|| |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
46035521 |
ctatacattcatttgcgtcgaaataccaatcttgcccctgataacttcacctacgctttcgcctttgcagcttgttctaatgataagcatttgatgcttc |
46035422 |
T |
|
| Q |
201 |
tgcatgctcattctattattgatgggtatggttctaat |
238 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
46035421 |
tgcatgctcattctattattgatggatatggttctaat |
46035384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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