View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11286_high_2 (Length: 600)

Name: NF11286_high_2
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11286_high_2
NF11286_high_2
[»] chr8 (7 HSPs)
chr8 (232-593)||(34476260-34476621)
chr8 (18-146)||(34476039-34476167)
chr8 (250-307)||(33451457-33451514)
chr8 (232-307)||(17775316-17775391)
chr8 (261-312)||(43420779-43420829)
chr8 (244-306)||(39211157-39211219)
chr8 (250-306)||(15794932-15794988)
[»] chr4 (8 HSPs)
chr4 (449-581)||(20912153-20912286)
chr4 (265-316)||(8810709-8810759)
chr4 (250-307)||(39158227-39158284)
chr4 (250-307)||(41262237-41262294)
chr4 (260-308)||(10147477-10147524)
chr4 (276-316)||(14443346-14443386)
chr4 (276-316)||(19651802-19651842)
chr4 (250-306)||(42062525-42062581)
[»] chr7 (6 HSPs)
chr7 (385-453)||(36802328-36802396)
chr7 (277-307)||(26749153-26749183)
chr7 (274-307)||(2008724-2008757)
chr7 (274-307)||(28249462-28249495)
chr7 (458-490)||(36802452-36802484)
chr7 (260-308)||(42853733-42853780)
[»] chr2 (6 HSPs)
chr2 (250-317)||(14871993-14872060)
chr2 (260-317)||(14877121-14877178)
chr2 (284-317)||(18906328-18906361)
chr2 (277-307)||(2427891-2427921)
chr2 (250-307)||(30831876-30831933)
chr2 (250-314)||(33412911-33412975)
[»] chr5 (7 HSPs)
chr5 (250-307)||(31748458-31748515)
chr5 (382-433)||(13798886-13798937)
chr5 (265-317)||(14323412-14323463)
chr5 (250-307)||(16971992-16972049)
chr5 (250-307)||(32872790-32872847)
chr5 (238-307)||(37172641-37172710)
chr5 (251-304)||(38363482-38363535)
[»] scaffold0244 (1 HSPs)
scaffold0244 (382-431)||(8130-8179)
[»] chr1 (3 HSPs)
chr1 (244-307)||(611528-611591)
chr1 (232-307)||(47642499-47642574)
chr1 (250-307)||(7918954-7919011)
[»] chr3 (4 HSPs)
chr3 (244-306)||(13778548-13778610)
chr3 (272-313)||(23378141-23378181)
chr3 (382-431)||(40698503-40698552)
chr3 (275-307)||(32631451-32631483)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 232 - 593
Target Start/End: Original strand, 34476260 - 34476621
Alignment:
Q  232 gtgtcaatatcaatattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctcttttagataattcaaacaa 331  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34476260 gtgtcaataccaatattgctttgtatattttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctcttttagataatttaaacaa 34476359  T
Q  332 tgaaatgctccaagtcaacgtcacacttgatcaccgatggtgacgtgtctaacataaggatttccaccctcatgcaactttgatttctctcattaggaag 431  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34476360 tgaaatgctccaagtcaacgtcagacttgatcaccgatggtgacgtgtctaacataaggattttcaccctcatgcaactttgatttctctcattaggaag 34476459  T
Q  432 ttcatctctcttctttagttgaccatgtttgatgcaaagaatgtcgacatcatgaagttgtggaattccccttctacatagatggatcttgtcttgcttg 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34476460 ttcatctctcttctttagttgaccatgtttgatgcaaagaatgtcgacatcatgaagttgtggaattccccttctacatagatggatcttgtcttgcttg 34476559  T
Q  532 ctcacatctttggggtgtttatgcaacaagttgcttagttttcctcttttatgtctctgctt 593  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  34476560 ctcacatctttggggtgtttgtgcaacaagttgcttagttttcctcttttatgtctttgctt 34476621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 34476039 - 34476167
Alignment:
Q  18 aaaataataaataaataatgacagaactgtatttaataatttnnnnnnncaaagtaattcatgattccatttcaatcctcctaaattgaaagggaacaaa 117  Q
    |||||||||||||||||||||||| |||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34476039 aaaataataaataaataatgacaggactgtatttaataatttaaaaaaacagagtaattcatgattccatttcaatcctcctaaattgaaagggaacaaa 34476138  T
Q  118 attgaggagtagtgggatatttcagaaat 146  Q
    |||||||||||||||||||||||| ||||    
T  34476139 attgaggagtagtgggatatttcaaaaat 34476167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 33451514 - 33451457
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  ||||||||||| | |||||||||||| ||| |||||||||||||||||    
T  33451514 ctttgtataatttgattgtctaacaagttgtcacaagaaagggttgttcaaataacat 33451457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 17775391 - 17775316
Alignment:
Q  232 gtgtcaatatcaatattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||| ||| ||||| |||||||| ||||  ||||| || ||||||| ||| ||||| ||||||||||||||||    
T  17775391 gtgtcaagatctatatttctttgtatattttagttgtcctacaagttgttacataaaatagttgttcaaataacat 17775316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 43420829 - 43420779
Alignment:
Q  261 ttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctc 312  Q
    |||||||||| |||| |||| ||||||| |||||||||||||||||||||||    
T  43420829 ttgattgtctcataaattgt-acaaaaagtggttgttcaaataacatatctc 43420779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 39211157 - 39211219
Alignment:
Q  244 atattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 306  Q
    ||||| |||||||| ||| |||||||| | |||||||||  ||||||| ||||||||||||||    
T  39211157 atatttctttgtatatttagattgtctcacaagttgtcaacaaaaatgattgttcaaataaca 39211219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 15794988 - 15794932
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 306  Q
    |||||||| ||||  ||||| || |||||||| || |||||||||||||||||||||    
T  15794988 ctttgtatattttagttgtcctacaagttgtctcataaaatggttgttcaaataaca 15794932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 581
Target Start/End: Complemental strand, 20912286 - 20912153
Alignment:
Q  449 gttgaccatgtttgatgcaaagaatgtcgacatcatgaagttgtggaattccccttctacatagatggatcttgtcttgc-ttgctcacatctttggggt 547  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||| | ||||| |  ||| || | |    
T  20912286 gttgaccaaatttgatgcaaagaatgtcgacatcatgaagttgtggaattccccttcgacatagttgaatctcgtcttacattgctgatgtctatgagat 20912187  T
Q  548 gtttatgcaacaagttgcttagttttcctctttt 581  Q
    ||||| ||||||| ||| ||||||||||||||||    
T  20912186 gtttaggcaacaaattgtttagttttcctctttt 20912153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 8810709 - 8810759
Alignment:
Q  265 ttgtcttataagttgtcacaaaaaatggttgttcaaataacatatctctttt 316  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  8810709 ttgtctcataagttgt-acaaaaagtggttgttcaaataacatatctctttt 8810759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 39158227 - 39158284
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  |||| |||||  |||||||||||||| |||||||||||||||||||||    
T  39158227 ctttgtataatttggttgtccaataagttgtcacaataaatggttgttcaaataacat 39158284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 41262294 - 41262237
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  |||| |||||| ||| |||||||||| ||| |||||||||||||||||    
T  41262294 ctttgtattatttggttgtctaataggttgtcacaagaaaaggttgttcaaataacat 41262237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 10147477 - 10147524
Alignment:
Q  260 tttgattgtcttataagttgtcacaaaaaatggttgttcaaataacata 308  Q
    ||||||||||||||||| |||||| |||||| |||||| ||||||||||    
T  10147477 tttgattgtcttataagatgtcac-aaaaatagttgtttaaataacata 10147524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 14443346 - 14443386
Alignment:
Q  276 gttgtcacaaaaaatggttgttcaaataacatatctctttt 316  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  14443346 gttgtcacaaaaaatggttgttcaaatatcattgctctttt 14443386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 19651842 - 19651802
Alignment:
Q  276 gttgtcacaaaaaatggttgttcaaataacatatctctttt 316  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  19651842 gttgtcacaaaaaatggttgttcaaatatcattactctttt 19651802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 42062581 - 42062525
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 306  Q
    |||||||| ||||| |||||  | |||||||| || |||||||||||||||||||||    
T  42062581 ctttgtatattttggttgtcccacaagttgtcccataaaatggttgttcaaataaca 42062525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 453
Target Start/End: Original strand, 36802328 - 36802396
Alignment:
Q  385 ataaggatttccaccctcatgcaactttgatttctctcattaggaagttcatctctcttctttagttga 453  Q
    ||||||||||| | |||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||    
T  36802328 ataaggatttctatcctcatgcaactttaatttccctcattagaaagttcatctctcttccttagttga 36802396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 307
Target Start/End: Original strand, 26749153 - 26749183
Alignment:
Q  277 ttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||||||||||||||||||||||||||||||    
T  26749153 ttgtcacaaaaaatggttgttcaaataacat 26749183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 2008757 - 2008724
Alignment:
Q  274 aagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||||| ||||||||||||||||||||||    
T  2008757 aagttgtcacataaaatggttgttcaaataacat 2008724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 28249495 - 28249462
Alignment:
Q  274 aagttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||||||||||| |||||||||||||||||||||    
T  28249495 aagttgtcacaagaaatggttgttcaaataacat 28249462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 36802452 - 36802484
Alignment:
Q  458 gtttgatgcaaagaatgtcgacatcatgaagtt 490  Q
    ||||| |||||||||||||||||||||||||||    
T  36802452 gtttggtgcaaagaatgtcgacatcatgaagtt 36802484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 42853780 - 42853733
Alignment:
Q  260 tttgattgtcttataagttgtcacaaaaaatggttgttcaaataacata 308  Q
    ||||||||||  |||| ||||| ||||||||||||||||||||||||||    
T  42853780 tttgattgtcccataatttgtc-caaaaaatggttgttcaaataacata 42853733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 14871993 - 14872060
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctctttta 317  Q
    ||||||||  ||||||||||| | ||||||| |||| ||||||||||||||||||||| |||||||||    
T  14871993 ctttgtataatttgattgtctaacaagttgttacaagaaatggttgttcaaataacatttctctttta 14872060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 260 - 317
Target Start/End: Original strand, 14877121 - 14877178
Alignment:
Q  260 tttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctctttta 317  Q
    |||| |||||| | |||||||||||| ||||||||||||||||||||| |||||||||    
T  14877121 tttggttgtctaacaagttgtcacaagaaatggttgttcaaataacatttctctttta 14877178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 317
Target Start/End: Original strand, 18906328 - 18906361
Alignment:
Q  284 aaaaaatggttgttcaaataacatatctctttta 317  Q
    ||||||||||||||||||||||||||||||||||    
T  18906328 aaaaaatggttgttcaaataacatatctctttta 18906361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 307
Target Start/End: Complemental strand, 2427921 - 2427891
Alignment:
Q  277 ttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||||||||||||||||||||||||||||||    
T  2427921 ttgtcacaaaaaatggttgttcaaataacat 2427891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 30831876 - 30831933
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  ||||||||| | | |||||||||||| ||||| |||||||||||||||    
T  30831876 ctttgtataatttgattgtataagaagttgtcacaataaatgattgttcaaataacat 30831933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 33412911 - 33412975
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacatatctctt 314  Q
    |||||||| ||||||||||   |||| |||||| | ||||| |||||||||||||||| ||||||    
T  33412911 ctttgtatattttgattgttccataaattgtcaaataaaatagttgttcaaataacatttctctt 33412975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 31748458 - 31748515
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  ||||||||||  |||||||||||||||||||| |||||||||||||||    
T  31748458 ctttgtataatttgattgtccaataagttgtcacaaaaaatgattgttcaaataacat 31748515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 13798886 - 13798937
Alignment:
Q  382 aacataaggatttccaccctcatgcaactttgatttctctcattaggaagtt 433  Q
    |||| |||||||| || ||||||||||||||| |||||||||||||||||||    
T  13798886 aacaaaaggattttcatcctcatgcaactttgctttctctcattaggaagtt 13798937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 14323463 - 14323412
Alignment:
Q  265 ttgtcttataagttgtcacaaaaaatggttgttcaaataacatatctctttta 317  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  14323463 ttgtcctataagttgtc-caaaaaatagttgttcaaataacatatctcattta 14323412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 16972049 - 16971992
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  ||||||||| | | |||||||||||| ||||| |||||||||||||||    
T  16972049 ctttgtataatttgattgtataagaagttgtcacaataaatgattgttcaaataacat 16971992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 32872847 - 32872790
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||| ||| |||||||||||  | |||||||||||| ||| |||||||||||||||||    
T  32872847 ctttttatattttgattgtccaacaagttgtcacaagaaagggttgttcaaataacat 32872790  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 37172710 - 37172641
Alignment:
Q  238 atatcaatattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||| ||||| |||||||| |||||||||||  |||| || ||  |||| |||||||||||||||||||    
T  37172710 atatctatatttctttgtatattttgattgtcccataaattatcttaaaatatggttgttcaaataacat 37172641  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 38363482 - 38363535
Alignment:
Q  251 tttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataa 304  Q
    ||||||| ||||| |||||  | ||||||||||| |||||||||||||||||||    
T  38363482 tttgtatattttggttgtcccacaagttgtcacataaaatggttgttcaaataa 38363535  T

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Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 8179 - 8130
Alignment:
Q  382 aacataaggatttccaccctcatgcaactttgatttctctcattaggaag 431  Q
    |||| |||||||| || ||||||||||||||| |||||||||||||||||    
T  8179 aacaaaaggattttcatcctcatgcaactttgctttctctcattaggaag 8130  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 611591 - 611528
Alignment:
Q  244 atattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||| |||||||| |||||||||||  | |||||||||  ||||||||||| |||||||||||    
T  611591 atatttctttgtatattttgattgtcccacaagttgtcaacaaaaatggttgctcaaataacat 611528  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 47642574 - 47642499
Alignment:
Q  232 gtgtcaatatcaatattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||||| |||| | ||| ||||||||  |||| |||||  | |||||||| |||||||||||||||||||||||||    
T  47642574 gtgtcactatctaaatttctttgtataatttggttgtccaacaagttgtcccaaaaaatggttgttcaaataacat 47642499  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 7919011 - 7918954
Alignment:
Q  250 ctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataacat 307  Q
    ||||||||  |||| |||||| | |||||||||||| ||| |||||||||||||||||    
T  7919011 ctttgtataatttggttgtctaacaagttgtcacaagaaagggttgttcaaataacat 7918954  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 13778548 - 13778610
Alignment:
Q  244 atattgctttgtatgttttgattgtcttataagttgtcacaaaaaatggttgttcaaataaca 306  Q
    ||||| |||||||| ||| |||||||| | || ||||||  ||||||||||||||||||||||    
T  13778548 atatttctttgtatatttagattgtctcacaaattgtcaacaaaaatggttgttcaaataaca 13778610  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 23378141 - 23378181
Alignment:
Q  272 ataagttgtcacaaaaaatggttgttcaaataacatatctct 313  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  23378141 ataagttgt-acaaaaagtggttgttcaaataacatatctct 23378181  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 40698552 - 40698503
Alignment:
Q  382 aacataaggatttccaccctcatgcaactttgatttctctcattaggaag 431  Q
    |||| |||||||| || ||||||||||||||| |||||||||||| ||||    
T  40698552 aacaaaaggattttcatcctcatgcaactttgctttctctcattatgaag 40698503  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 32631483 - 32631451
Alignment:
Q  275 agttgtcacaaaaaatggttgttcaaataacat 307  Q
    |||||||||| ||||||||||||||||||||||    
T  32631483 agttgtcacataaaatggttgttcaaataacat 32631451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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