View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11286_high_7 (Length: 341)
Name: NF11286_high_7
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 11294398 - 11294066
Alignment:
| Q |
1 |
acaattctagagtgagaaatgtggtggtggacatgtctatgacactcttttggtgcatgtaaggaaaagggttcatcacacctccaccaaggnnnnnnna |
100 |
Q |
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| T |
11294398 |
acaattctagagtgagaaatgtggtggtggacatgtctatgacactcttttggtgcatgtaaggaaaagggttcatcacacctccaccaaggttttttta |
11294299 |
T |
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| Q |
101 |
aaaacaaaaccttttgggtcccccgcatgggatttcaagaaatattgaaaggtacctccacctttgtatgnnnnnnnnaat--cnnnnnnnntcaagcaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
11294298 |
aaaacaaaaccttttgggtcccccgcatgggatttcaagaaatattgaaaggtacctccacctttgtatgttttttttaataaaaaaaaaaatcaagcaa |
11294199 |
T |
|
| Q |
199 |
tgttatatgaaaaacaaaacaaagtggacctgacccaaaggtagggttacatgttccaaactcttcctcttccagaaggaaagttatatgcataaagagg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11294198 |
tgttatatgaaaaacaaaacaaagtggacctgacccaaaggtagggttacatgttccaaactcttcctcttccagaaggaaagttatatgcataaagagg |
11294099 |
T |
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| Q |
299 |
acttcattatcatagcacatagcaaagggagac |
331 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11294098 |
acttcattatcatagcacatagcaaagggagac |
11294066 |
T |
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