View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11286_high_9 (Length: 274)

Name: NF11286_high_9
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11286_high_9
NF11286_high_9
[»] chr4 (6 HSPs)
chr4 (1-274)||(48965460-48965733)
chr4 (30-273)||(48958276-48958522)
chr4 (1-168)||(48912117-48912284)
chr4 (132-256)||(48961445-48961569)
chr4 (2-72)||(48962627-48962697)
chr4 (113-249)||(48974265-48974401)
[»] scaffold0536 (2 HSPs)
scaffold0536 (11-274)||(6293-6559)
scaffold0536 (11-207)||(10277-10471)
[»] chr6 (2 HSPs)
chr6 (2-249)||(12589942-12590189)
chr6 (2-247)||(12483237-12483482)
[»] chr2 (3 HSPs)
chr2 (101-274)||(13440331-13440504)
chr2 (101-274)||(13448494-13448667)
chr2 (179-274)||(13454965-13455060)
[»] chr7 (1 HSPs)
chr7 (101-274)||(3417402-3417575)
[»] chr5 (2 HSPs)
chr5 (101-274)||(28385465-28385638)
chr5 (179-274)||(12540816-12540911)
[»] chr8 (1 HSPs)
chr8 (101-243)||(12641353-12641495)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 48965733 - 48965460
Alignment:
Q  1 agagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965733 agagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcag 48965634  T
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48965633 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 48965534  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48965533 aggagaagcaaaagtggttaccaaagggattcgaagagagaaacattggaaagaagggtttgattattaggggt 48965460  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 30 - 273
Target Start/End: Complemental strand, 48958522 - 48958276
Alignment:
Q  30 tgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgtt-atcaggataaacagctttatgagattgcgtgtg 128  Q
    ||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| | |||  || ||| | ||||||| |||||||||||||||||||    
T  48958522 tgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctg-ataaacaactttatgagattgcgtgtg 48958424  T
Q  129 caatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagag 228  Q
      ||||||||||| ||||| || ||| |||||||| ||||    || || |||||||| || |||||||||||||||||   ||||||||| || ||  |    
T  48958423 ggatagaagcatcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaagaagacgagagtgaagaggagaaaggaaagtggttgccgaaagg 48958324  T
Q  229 attcgaagagagaaacattggaaagaag---ggtttgattattagggg 273  Q
    ||||||||||||||||||||||||||||   |||||||| ||||||||    
T  48958323 attcgaagagagaaacattggaaagaagaaaggtttgatcattagggg 48958276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 48912117 - 48912284
Alignment:
Q  1 agagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcag 100  Q
    ||||||||  ||||| ||||| ||||||||||||||||| || ||||| | | ||||||| ||| |||||||| ||||||||||||  |||| || |  |    
T  48912117 agagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcg 48912216  T
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 168  Q
    |||||||| ||||||||||||||||| |  || ||||||||| |||| || || ||||||||| ||||    
T  48912217 gataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 48912284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 48961569 - 48961445
Alignment:
Q  132 tagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagatt 231  Q
    |||||||||||||||| || ||| |||||||| ||||    || || ||||||| ||||||||| |||||||||||  | |||||||| || ||  ||||    
T  48961569 tagaagcatcgggtcacgaatttgtatgggttgttcctgagaaaaaagggaaagtggatgagagcgaagaggagaaagacaagtggttgccgaaaggatt 48961470  T
Q  232 cgaagagagaaacattggaaagaag 256  Q
     |||||||||||||||| |||||||    
T  48961469 tgaagagagaaacattgaaaagaag 48961445  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 48962697 - 48962627
Alignment:
Q  2 gagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacat 72  Q
    |||||||  ||| |||| ||||||||| || | ||||| ||||| ||||||||||||||||||||||||||    
T  48962697 gagagtgttgtgggcgtacaagagtgtctgtggtggcttaattcaaagcgacataactcagtgttgtacat 48962627  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 48974401 - 48974265
Alignment:
Q  113 tatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagcaaa 212  Q
    |||||||||||  | ||||||||||||||||||||  | || ||||||||| | |||   || || |||||||||||||||||  | || |||||  |||    
T  48974401 tatgagattgcaagcgcaatagaagcatcgggtcaccaattcatatgggttgtccccgagaagaaagggaaagaggatgagagcaatgacgagaacgaaa 48974302  T
Q  213 agtggttaccaaagagattcgaagagagaaacattgg 249  Q
    ||||| | |||||| |||| |||||||| || |||||    
T  48974301 agtggatgccaaagggatttgaagagaggaatattgg 48974265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 6293 - 6559
Alignment:
Q  11 gtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagc 110  Q
    ||||| ||||| |||||| ||||||||||  | ||||||| | |||||||||||||||||||| ||||||||||| | || | ||  | ||||||||| |    
T  6293 gtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaac 6392  T
Q  111 tttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaagca 210  Q
    |||| |||||||| ||||  |||||||||||||||||  | || ||||||||| ||||    || || |||||||| ||||||||||||||||||||       
T  6393 tttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgaagaggagaaagg 6492  T
Q  211 aaagtggttaccaaagagattcgaagagagaaacattgga---aagaagggtttgattattaggggt 274  Q
    ||| ||||| |||||| |||||||||||||||| || |||   ||||||||||||||||||||||||    
T  6493 aaaatggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggt 6559  T

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Target: scaffold0536; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 10277 - 10471
Alignment:
Q  11 gtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcaggataaacagc 110  Q
    ||||| ||||| |||||| |||||||||| || | ||||||| |||  ||||||||||||||  ||||||||||||| |||  || |   |||||||| |    
T  10277 gtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatgttatttttcagataaacaac 10374  T
Q  111 tttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaagaggagaa 207  Q
    ||||||||||||||||     |||||||||||||| | || ||| |||| ||| ||||    || || ||||||||| |||||||| ||||||||||    
T  10375 tttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcctgagaagaaagggaaagagaatgagagtcaagaggagaa 10471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 12589942 - 12590189
Alignment:
Q  2 gagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcag 100  Q
    |||||||  |||| ||||||||||||| |||||||||| || ||||||||| ||||||| |||||||||||| ||||||| ||| | || |  || |||     
T  12589942 gagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctca- 12590040  T
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| |||||||||||| ||||||  ||||||||||| || || || ||  ||||||||||||||   || || ||||| || ||||||||||| |    
T  12590041 gataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcccgagaaaaaagggaaggaagatgagagtgatg 12590140  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattgg 249  Q
    |||| || ||||| ||||| || |   |||| |||||||||||||||||    
T  12590141 aggataaacaaaaatggttgcctagtggatttgaagagagaaacattgg 12590189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 12483237 - 12483482
Alignment:
Q  2 gagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctgtcgttatcagg 101  Q
    |||||||  ||||||||||| ||||||   |||||||| || || |||| | | || ||||||||||||||| ||||||| ||||| ||   ||     |    
T  12483237 gagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctg 12483336  T
Q  102 ataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaaga 201  Q
    ||||||||||||| || ||| | || | |||||||||||||||| |  | || ||||||||| ||||    || || ||||| || |||||||| || ||    
T  12483337 ataaacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcctgagaaaaaagggaaggaagatgagagcgatga 12483436  T
Q  202 ggagaagcaaaagtggttaccaaagagattcgaagagagaaacatt 247  Q
    ||||||  |||||||||| || ||| |||| || ||||||||||||    
T  12483437 ggagaaagaaaagtggttgccgaagggatttgaggagagaaacatt 12483482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 13440504 - 13440331
Alignment:
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| || |||||||| ||||| ||||||||||||||  ||||    || ||||||||| ||||    || || |||||||| ||||||||||| |    
T  13440504 gataaacaactatatgagatggcgtgcgcaatagaagcatctagtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagtgagg 13440405  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    | |||||  |||||||||| |||||| |||||||||||||||||||| | | || ||||||||| |||| ||||    
T  13440404 aagagaaagaaaagtggttgccaaagggattcgaagagagaaacattaggaggatgggtttgatcattaagggt 13440331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 13448667 - 13448494
Alignment:
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| || || ||||| || ||||| ||||||||||| |||||    || ||||||||| ||||    || || |||||||| |||||||| ||||    
T  13448667 gataaacaactatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagagcgaag 13448568  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    | |||||  ||||||||||||| ||| |||| ||||||||||| || || |||||||||||||| |||||||||    
T  13448567 aagagaaagaaaagtggttaccgaagggatttgaagagagaaatatcgggaagaagggtttgatcattaggggt 13448494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 13455060 - 13454965
Alignment:
Q  179 gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    |||||||| |||||||| ||||||||||| ||||||||||| || ||| |||| ||||||| |||||| |  || ||||||||||| |||||||||    
T  13455060 gggaaagaagatgagagcgaagaggagaaacaaaagtggttgccgaagggatttgaagagaaaaacatcgagaaaaagggtttgatcattaggggt 13454965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 3417402 - 3417575
Alignment:
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| || ||||||||||| |  ||||||||||||||||||||    || ||||||||| |||     || || || ||||| |||||||  ||||    
T  3417402 gataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattcatatgggttgttcttgagaagaaaggaaaagaagatgagaacgaag 3417501  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    | |||||  |||||||||| || ||| |||| || |||||||||||||||||||||||||||||  ||||||||    
T  3417502 aagagaaagaaaagtggttgccgaagggatttgaggagagaaacattggaaagaagggtttgatcgttaggggt 3417575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 28385638 - 28385465
Alignment:
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| || ||||||||||| || ||| |||||||||| |||||    || ||||||||| ||||    || || |||||||| |||||||  ||||    
T  28385638 gataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattcatatgggttgttcctgagaagaaagggaaagaagatgagatcgaag 28385539  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    | |||||  |||||||| | |||||| |||| || |||||||||||||||||||||||||| || || ||||||    
T  28385538 aagagaaagaaaagtggctgccaaagggatttgaggagagaaacattggaaagaagggtttcataatcaggggt 28385465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 12540911 - 12540816
Alignment:
Q  179 gggaaagaggatgagagtgaagaggagaagcaaaagtggttaccaaagagattcgaagagagaaacattggaaagaagggtttgattattaggggt 274  Q
    |||||||| ||||||| |||||| |||||  |||||||| | || ||| |||| || ||||||||||||||||| ||||||||||| |||||||||    
T  12540911 gggaaagaagatgagactgaagaagagaaagaaaagtggatgccgaagggatttgaggagagaaacattggaaaaaagggtttgatcattaggggt 12540816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 12641353 - 12641495
Alignment:
Q  101 gataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaagaggatgagagtgaag 200  Q
    |||||||| ||||| ||||||||| | | |||||||   || ||||| || ||| |||||||| ||||    || || |||||| | |||||||||||||    
T  12641353 gataaacaactttacgagattgcgagcggaatagaaaattcaggtcacgaatttgtatgggttgttcctgagaagaaagggaaaaaagatgagagtgaag 12641452  T
Q  201 aggagaagcaaaagtggttaccaaagagattcgaagagagaaa 243  Q
    |||||||  |||||||||| || ||  ||||||||||||||||    
T  12641453 aggagaaagaaaagtggttgcctaaaggattcgaagagagaaa 12641495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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