View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11286_low_1 (Length: 914)
Name: NF11286_low_1
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 489
Target Start/End: Original strand, 43612143 - 43612640
Alignment:
| Q |
6 |
agaagcagagacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattccca---cttctnnnnnnnnnnnnnnnnnnnncttggagt |
102 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
43612143 |
agaagctgggacttggaaacagggatgtgtttctgtctaggcacttgtattttagaaattcccacttcttcatcatcatcatcatcatcatccttggagt |
43612242 |
T |
|
| Q |
103 |
ttttcttgttgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43612243 |
ttttcttgttgttggggttttcactctgcctcacttgttcttgtgactctgaggcaacagatactatttcctgaagccttgaacaaggaagcctgtgttg |
43612342 |
T |
|
| Q |
203 |
tctgagaagtggagaagagagtaactgctgccggtggcgggcgtagtatgggaaagagtgctgctgctgtgacagtggctgccaaattggaaaagctttg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43612343 |
tctgagaagtggagaagagagtaactgctgccggtggcggccgtagtatgggaaagagtgctgttgctgtgacagtggctgccaaattggaaaagctttg |
43612442 |
T |
|
| Q |
303 |
ctggtggggaaaggatgataataatatgagtatgatgacatttggatatgagaaattgagaatgaatgagagactcaaatgtgcaaaggtacgtgtatga |
402 |
Q |
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| T |
43612443 |
ctggtggggaaaggatgataataatatgagtatgatgacatttggatatgagaaattgagaatgaatgagagactcaaatgtgcaaaggtacgtgtatga |
43612542 |
T |
|
| Q |
403 |
atgtaa----tatgtatgtatggtttccaac-------gataaatccaattaacttgaaaaatcaaactaaatatatcctttgggtatcggtttagat |
489 |
Q |
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| T |
43612543 |
atgtaatatgtatgtatgtatggtttccaacgggatttgataaatccaattaacttgaaaaatcaaactaaatatatcctttgtgtatcggtttagat |
43612640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 524 - 898
Target Start/End: Original strand, 43612675 - 43613048
Alignment:
| Q |
524 |
tcattattggttcgggtgacgattgagagaagtcagtcacccgactagcaaaataccgttgtgatttatgaatcaactttttatcaattgaactaatctt |
623 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43612675 |
tcattattggttcgggtgacgattgagagaactcagtcacccgaccagcaaaatatagttgtgatttatgaatcaactttttatcaattgaaccaatctt |
43612774 |
T |
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| Q |
624 |
cttgcgttgacacgtaacactttgttactttattatttaaatgtgtggcacaagtatcgtacatacccaaaacccaatcttttaatttggtttcacagcc |
723 |
Q |
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| T |
43612775 |
cttgcgttgacacgtaacactttgttactttattatttaaatgtgtggcacaagcatcgtacatacccaaa-cccaatcttttaatttggtttcacagcc |
43612873 |
T |
|
| Q |
724 |
tcacattatcgcacaaacagacaatccactactctacactcacagcgtcatctccttctccgcgcagtcgttccactgttcagagttgccaaggccactc |
823 |
Q |
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| T |
43612874 |
tcacattatcgcacaaacagacaatccactactctacactcacagcgtcatctccttctccgcgcagtcgttccactgttcagagttgccaaggccactc |
43612973 |
T |
|
| Q |
824 |
ctccttctccgccgtcgaagccaaccacggttttctcctaactcacagaggtagactctatttttaacatctatt |
898 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43612974 |
ctccttctccgccgtcgaagccaaccacggttttctcctaactcacagaggtagactctatttttaacatctatt |
43613048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 590 - 620
Target Start/End: Complemental strand, 47642313 - 47642283
Alignment:
| Q |
590 |
tatgaatcaactttttatcaattgaactaat |
620 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
47642313 |
tatgaatcaactttttatcaattgaactaat |
47642283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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