View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11286_low_10 (Length: 269)
Name: NF11286_low_10
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 32885774 - 32885535
Alignment:
| Q |
19 |
ctctattcccaaattcttatctcattcaatatggaccccgcatagcagcagccagcaagtatttaattgagattttatattatggtaaacctcaatatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32885774 |
ctctattcccaaattcttatctcattcaatatggaccccgcatagcagcagccagcaagtatttaattgagattttatattatggtaaacctcaatatta |
32885675 |
T |
|
| Q |
119 |
tgagatggtctgttttaaaaaacagttgattattctgcacaatttagggtgcttatatgtttgtaaagataatagaaaatttgaaataatcgaacctaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32885674 |
tgagatggtctgttttaaaaaacagttgcttattctgcacaatttagggtgcttatatgtttgtaaagataatagaaaatttgaaataatcgaacctaaa |
32885575 |
T |
|
| Q |
219 |
actttaaggaaactctcagatcctaagtcaatatgttcat |
258 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
32885574 |
actttaaggaaactctcaggtcctaagtcaatatgttcat |
32885535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 32880981 - 32880862
Alignment:
| Q |
87 |
gagattttatattatggtaaacctcaatattatgagatggtctgttttaaaaaacagttgattattctgcacaatttagggtgcttatatgtttgtaaag |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32880981 |
gagattttatattatggtaaacctcaatattatgagatggtttattttaaaaaacagttgcttattctgcacaatttagggtgcttatatgtttgtaaag |
32880882 |
T |
|
| Q |
187 |
ataatagaaaatttgaaata |
206 |
Q |
| |
|
|||||| ||||||||||||| |
|
|
| T |
32880881 |
ataataaaaaatttgaaata |
32880862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 32881072 - 32881024
Alignment:
| Q |
20 |
tctattcccaaattcttatctcattcaatatggaccccgcatagcagca |
68 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32881072 |
tctattcccaaattcttatcccattcaatatggaccccgcatagcagca |
32881024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University