View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11286_low_13 (Length: 236)
Name: NF11286_low_13
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55478924 - 55479142
Alignment:
| Q |
1 |
aaaaatggaaatcccaatacccaactttagagtcctgacttattattattcctattattactactcatgtcatgatatgtgcgatctctttaataatttc |
100 |
Q |
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| T |
55478924 |
aaaaatggaaatcccaatacccaactttagagtcctgacttattattctt---attattactactcatgtcatgatatgtgcgatctctttaataatttc |
55479020 |
T |
|
| Q |
101 |
acttgaaattttactcttgagacttgattacatgttcttcaccataaacaactagtgaggctggcaaatagtacaagtttataacttacctttatgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55479021 |
acttgaaattttactcttgagacttgattacatgttcttcaccataaacaactagtgaggctggcaaatagtacaagtttataacttacctttatgagaa |
55479120 |
T |
|
| Q |
201 |
tattcttgatctcgatatttct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
55479121 |
tattcttgatctcgatatttct |
55479142 |
T |
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