View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11286_low_4 (Length: 375)
Name: NF11286_low_4
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 15322767 - 15322637
Alignment:
| Q |
141 |
taaaacttgatatctaccctcaacataatattaacaatacttacactttttgtaaaataataggg--acactactctcatcaaatccatttgatcacatt |
238 |
Q |
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| T |
15322767 |
taaaacttaatatctaccctcaacataatattaacaatacttacacttgttgtaaaataatagggttacactactctcatcaaatccatttgatcacatt |
15322668 |
T |
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| Q |
239 |
acacaatacttgaatttaattggacgtgtaa |
269 |
Q |
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| T |
15322667 |
acacaatacttgaatttaattggacgtgtaa |
15322637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 15322614 - 15322518
Alignment:
| Q |
269 |
aacaaaaaattattcattcatgataaaagacgggtttggatcctcttctaccatttttgtcatgttgttggtgctgcattaatcacaaccattcatc |
365 |
Q |
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| T |
15322614 |
aacaaaaaattattcattcatgataaaagacgggtttagatcctcttctaccatttttgttatgttgttggtgctgcattaatcacaaccattcatc |
15322518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 15322838 - 15322761
Alignment:
| Q |
35 |
ctgatcatataattaggataatgaaaatatcaattaactaaaaagaaaatagatcttattactaagagatttaaaact |
112 |
Q |
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| T |
15322838 |
ctgatcatataattaggataatgaaaatatcaattaactaagaagaaaatagatctcattactgagagatttaaaact |
15322761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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