View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11286_low_5 (Length: 359)
Name: NF11286_low_5
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11286_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 349
Target Start/End: Original strand, 47119302 - 47119632
Alignment:
| Q |
2 |
ttttcttatatatattttaaaaattaatcgatttttacaaaaa-gtaaacaactcatttatataaaataacacgtttaaaaaatgattgagtacttatca |
100 |
Q |
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| T |
47119302 |
ttttcttatatatattttaaaaattaatcgatttttacaaaaaagtaaacaactcatttatataaaataacacgtttaaaaaat--------------ca |
47119387 |
T |
|
| Q |
101 |
tgacataggaaggaatatgctgatgagatagcctttgtcgtgaattgacctgtatgtatgtaccaacgaacgatgacttcacaaggacataatcgtccat |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47119388 |
tgacataggaaggaatatgctgatgagataacctttgtcgtgaattgacctgta----tgtaccaacgaacgatgacttcacaaggacataatcgtccat |
47119483 |
T |
|
| Q |
201 |
gcagataatttccgcgggtacggtagttaggaaacgcgcccattttgtggaccccacctcaaactcggcttattacaacaatgtgaaaagctgactcagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47119484 |
gcagataatttccgcgggtacggtagttaggaaacgcgcccattttgtggaccccacctcaaactcggcttattacaacaatgtgaaaagctgactcagc |
47119583 |
T |
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| Q |
301 |
gatagttgtgtctatccaatctcatttgtccatgttaccttcatttcat |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47119584 |
gatagttgtgtctatccaatctcatttgtccatgttaccttcatttcat |
47119632 |
T |
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