View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11286_low_6 (Length: 350)

Name: NF11286_low_6
Description: NF11286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11286_low_6
NF11286_low_6
[»] chr8 (2 HSPs)
chr8 (150-240)||(4639009-4639099)
chr8 (16-88)||(4638875-4638947)
[»] chr1 (3 HSPs)
chr1 (155-232)||(48512355-48512433)
chr1 (39-88)||(48512479-48512528)
chr1 (16-44)||(48512536-48512564)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 4639009 - 4639099
Alignment:
Q  150 ataattttaataacactggaaaatatactactaatttaccttgccaaagggtgaaacatgttgtaacgctgcaattcgttcacaaagcttc 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4639009 ataattttaataacactggaaaatatactactaatttaccttgccaaagggtgaaacatgttgtaacgctgcaattcgttcaccaagcttc 4639099  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4638875 - 4638947
Alignment:
Q  16 gagcacagaacctgaacttgatcatgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatg 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4638875 gagcacagaacctgaacttgatcatgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatg 4638947  T

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Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 48512433 - 48512355
Alignment:
Q  155 tttaataacactggaaaatatactactaatttaccttgccaaagggtgaaaca---tgttgtaacgctgcaattcgttcac 232  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  48512433 tttaataacactggaaaatatat--ctaatttaccttgccaaagggtgaaacaagttgttgtaacgctgcaattcgttcac 48512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 48512528 - 48512479
Alignment:
Q  39 atgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatg 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48512528 atgtaaccagtagcctcgtgaagcaccgaagctgtatcagtctgcacatg 48512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 48512564 - 48512536
Alignment:
Q  16 gagcacagaacctgaacttgatcatgtaa 44  Q
    |||||||||||||||||||||||||||||    
T  48512564 gagcacagaacctgaacttgatcatgtaa 48512536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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