View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_1 (Length: 694)
Name: NF11287_low_1
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 673
Target Start/End: Complemental strand, 37789754 - 37789103
Alignment:
| Q |
18 |
caaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37789754 |
caaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactcc |
37789655 |
T |
|
| Q |
118 |
aatttagtttttccaatctatgtatggaa---caaaagcatataatagagtaactaatagtgtaaaataactgagaatataggaaacaagataaaatgca |
214 |
Q |
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| T |
37789654 |
aatttagtttttccaatctatgtatggaaaatcaaaagcatataatagagtaactaata----------actgataatataggaaacaagataaaatgca |
37789565 |
T |
|
| Q |
215 |
gcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtc |
314 |
Q |
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| T |
37789564 |
gcaagtgtgtagtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacatagcgaacataaatgttgatgaggttaaagtc |
37789465 |
T |
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| Q |
315 |
atgccttcggcaaacatattcataaataaacttcccctgaaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaaaatggggttca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
37789464 |
atgccttcggcaaacatattcataaataaacttcccctggaataatacatgacaaattaagagtgaaaatacattctagtcgatgaaaata--gggttca |
37789367 |
T |
|
| Q |
415 |
ctttgatcccttggaaaagaaa-----gctccgttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatg |
509 |
Q |
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| T |
37789366 |
ctttgatcccttaaaaaagaaattaaagctaggttgtttttatctaagcagaacgcacaattattaatctctaagaaaaataaaccggattactttaatg |
37789267 |
T |
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| Q |
510 |
acgaattgaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaatta |
609 |
Q |
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| T |
37789266 |
acgaattgaaccttcatctaaacattaaaaaacatggattttatctagtttgtcactccaccattccaccattttagatgcatgacatgtcattcaatta |
37789167 |
T |
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| Q |
610 |
aggaacaacatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtctgtgctgctc |
673 |
Q |
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| T |
37789166 |
aggaacaacatgctcgttgacaatacttgcaaattaaagaaaaacatttaggtctttgttgctc |
37789103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 37798361 - 37798219
Alignment:
| Q |
225 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttgaacattgcgaacataaatgttgatgaggttaaagtcatgccttcgg |
324 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||| || || |||| |
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| T |
37798361 |
agtgagtacccaaataatattgccatgatgaaggtaatgcctggagtaaggttgaacatagctagcataaatgttgctgaggttaaagcaataccctcgg |
37798262 |
T |
|
| Q |
325 |
caaacatattcataaataaacttcccctgaaataatacatgac |
367 |
Q |
| |
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|| | | || ||||||||||||||||||||||| ||| |||| |
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| T |
37798261 |
cataaaggtttataaataaacttcccctgaaatattacgtgac |
37798219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 37800598 - 37800479
Alignment:
| Q |
20 |
aatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactccaa |
119 |
Q |
| |
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|||||| ||||||||||| ||||| ||||||| || |||||| |||||||| || ||| |||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
37800598 |
aatattgatttctgctccattgtaaaatgtcatcagcatcgcaccactaattccaattgctgttcccatcactttagcctttccttctgctagactccaa |
37800499 |
T |
|
| Q |
120 |
tttagtttttccaatctatg |
139 |
Q |
| |
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|| | ||||||||||||||| |
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| T |
37800498 |
ttcaatttttccaatctatg |
37800479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 37807957 - 37807836
Alignment:
| Q |
18 |
caaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactcc |
117 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||| | ||| ||||||| ||| || |||| ||||||||| ||||| |||||||| ||||||| | || |
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| T |
37807957 |
caaatattaatttccactcctttgtaaaatatcataagcattgccccaccaatgccaattactgttcctattactttggcctttccctctactaatcccc |
37807858 |
T |
|
| Q |
118 |
aatttagtttttccaatctatg |
139 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
37807857 |
aatttagcttttccaatctatg |
37807836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 37781334 - 37781213
Alignment:
| Q |
18 |
caaatattaatttctgctcctttgtagaatgtcaacaccatcgccccactaatccccattaatgttcctatcactttagcctttccttctactacactcc |
117 |
Q |
| |
|
||||||| ||||||| ||||| |||| ||| ||| |||||| |||||||| || | |||| ||||||||| || || || ||||||||| ||| | || |
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| T |
37781334 |
caaatatcaatttctactcctctgtaaaatatcatcaccattgccccactgatgctaattattgttcctattaccttggcttttccttctgctaatcccc |
37781235 |
T |
|
| Q |
118 |
aatttagtttttccaatctatg |
139 |
Q |
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||||||| |||||||||||||| |
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| T |
37781234 |
aatttagcttttccaatctatg |
37781213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 37780876 - 37780823
Alignment:
| Q |
225 |
agtgagtacccgaagaatattgccatgatgaaggtaatgcctggagtaaggttg |
278 |
Q |
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||||||||||||||| |||| |||||||||||||||| |||||| |||||||| |
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| T |
37780876 |
agtgagtacccgaaggatatggccatgatgaaggtaactcctggaataaggttg |
37780823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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