View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_12 (Length: 333)
Name: NF11287_low_12
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 5362823 - 5362519
Alignment:
| Q |
11 |
cagagaactcggaaataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagt |
110 |
Q |
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| T |
5362823 |
cagagaactcggaaataatattttccaatgatggatataatagtgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagt |
5362724 |
T |
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| Q |
111 |
tgttgaatatcacaactgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggttgacgaaatcct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5362723 |
tgttgaatatcacaactgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggtccacgaaatcct |
5362624 |
T |
|
| Q |
211 |
gtgggcggtaaaaatctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcc |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5362623 |
gtgggcggtaaaaatctagactgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcaatttgatgaaacagtcaaaagagttaaagcc |
5362524 |
T |
|
| Q |
311 |
cgtgg |
315 |
Q |
| |
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||||| |
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| T |
5362523 |
cgtgg |
5362519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 5368039 - 5367735
Alignment:
| Q |
11 |
cagagaactcggaaataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5368039 |
cagagaactcggaaataatattttccaatgatggatataatagtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagt |
5367940 |
T |
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| Q |
111 |
tgttgaatatcacaactgacagagattcgtaatagctggacattatgtgaaatggcgtaatttaccatgctttcgagtatttcagggttgacgaaatcct |
210 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |
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| T |
5367939 |
tgttgaatatcacaactgacagagattcgtagtagctggacattatgtgaaatggcgtaatttaccatgctttcgagtattttagggtccacaaaatcct |
5367840 |
T |
|
| Q |
211 |
gtgggcggtaaaaatctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcc |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5367839 |
gtgggcggtaaaaatctagactgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaagcc |
5367740 |
T |
|
| Q |
311 |
cgtgg |
315 |
Q |
| |
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||||| |
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| T |
5367739 |
cgtgg |
5367735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 5374559 - 5374454
Alignment:
| Q |
54 |
tgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcacaactgacagagattcgtaatagctggacat |
153 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| ||||| ||||||||| | ||||||||| |
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| T |
5374559 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagattcgtactcgctggacat |
5374460 |
T |
|
| Q |
154 |
tatgtg |
159 |
Q |
| |
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|||||| |
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| T |
5374459 |
tatgtg |
5374454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 5368802 - 5368700
Alignment:
| Q |
54 |
tgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcacaactgacagagattcgtaatagctggacat |
153 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| ||||| ||| ||||| | ||||||||| |
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| T |
5368802 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagactcgtactcgctggacat |
5368703 |
T |
|
| Q |
154 |
tat |
156 |
Q |
| |
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||| |
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|
| T |
5368702 |
tat |
5368700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 8400207 - 8400273
Alignment:
| Q |
53 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaata |
119 |
Q |
| |
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||||| |||||||| |||||| ||||| |||||||||||||||||| ||| ||| |||||||||| |
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| T |
8400207 |
gtgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
8400273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 308
Target Start/End: Complemental strand, 5356183 - 5356094
Alignment:
| Q |
219 |
taaaaatctagagtgtggagggcagttgaatcatcgcgaagagacaaaatttgagtcagcgatttgatgaaacagtcaaaagagttaaag |
308 |
Q |
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|||| ||||||||||||||| | |||| ||||||||||| |||| ||||| ||| | ||||| ||||||| ||||||||||| |||| |
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| T |
5356183 |
taaagatctagagtgtggagagaagttaaatcatcgcgatgagataaaatccgagagactgatttcatgaaactgtcaaaagagtaaaag |
5356094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 30054956 - 30055021
Alignment:
| Q |
53 |
gtgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaat |
118 |
Q |
| |
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||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||||| ||||| |
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| T |
30054956 |
gtgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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