View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_15 (Length: 299)
Name: NF11287_low_15
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 43667624 - 43667348
Alignment:
| Q |
16 |
aataatataatctcaaaagtggtccaaaatgggtccatatttttacattagggtcagccacgccacatccatccacatgaatgtctgcccataaaccctt |
115 |
Q |
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| T |
43667624 |
aataatataatctcaaaagtggtccaaaatgggtccatatttttacattagggtcagccacgccacatccatccacatgaatgtctgcccataaaccctt |
43667525 |
T |
|
| Q |
116 |
tctgacaacattttctttctttattcaattgtatactcaatatattttgtgtcatttccagttacaaatgactaacaaacaaatataaatccatagtagc |
215 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43667524 |
tctgacaacattttctttctttattcaattatatactcaatatattttgtgtcatttccggttacaaatgactaacaaacaaatataaatccatagtagc |
43667425 |
T |
|
| Q |
216 |
taaaatgatagtactacacctgccatagaatagaaaacttctctaagcaaaacaacaacaaaatgtgactgtctgtg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
43667424 |
taaaatgatagtactacacctgccatagaatagaaaacttctctatgcaaaacaacaacaaaatgtgactgtttgtg |
43667348 |
T |
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