View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_16 (Length: 287)
Name: NF11287_low_16
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 35035756 - 35036014
Alignment:
| Q |
19 |
ttttcactacgtagaagcaatattactacgggtgcagcttcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctcc |
118 |
Q |
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| T |
35035756 |
ttttcgctacgtagaagcaatattactacgggtgcagcttcaatgacacc------accacccgaagctgctggcgcttggcctttaatcggccacctcc |
35035849 |
T |
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| Q |
119 |
acctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgcgtttaggtgttcatcgaacttt |
218 |
Q |
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| T |
35035850 |
acctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcacagtgcgtttaggtgttcatcgaacttt |
35035949 |
T |
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| Q |
219 |
agttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
283 |
Q |
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| T |
35035950 |
agttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
35036014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 281
Target Start/End: Original strand, 35019629 - 35019813
Alignment:
| Q |
97 |
tggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccgtgc |
196 |
Q |
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| T |
35019629 |
tggccgttaatcggccacctccacctcttaggtggttcccaaccacctcacgtcaccttaggaaacttagccgacaaatacggacccatcttcaccgttc |
35019728 |
T |
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| Q |
197 |
gtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttc |
281 |
Q |
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| T |
35019729 |
gtttaggtgttcacaaaaccttagtagtaagcagttatgaaatggtgaaacagtgttttaccgtaaacgacaaaacttttgcttc |
35019813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 55 - 281
Target Start/End: Original strand, 35029678 - 35029905
Alignment:
| Q |
55 |
gcttcaatgacaccaccaccaccacccgaagctgctggcgcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcacct |
154 |
Q |
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| T |
35029678 |
gcttcaaagacaccaccaccgccgccagaagccagcggagcatggccgttaattggccacctccacctcttaggtgggtcccaaccacctcacgttacct |
35029777 |
T |
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| Q |
155 |
tgggaaacttagccgacaaatacggagccat-cttcaccgtgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtt |
253 |
Q |
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| T |
35029778 |
taggaaacttagccgacaaatacggacccatccttcaccgttcgtttaggtgttcacaaaaccttagttgtaagcagttatgaaatggtgaaacaatgtt |
35029877 |
T |
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| Q |
254 |
tcactgtaaacgacaaagcctttgcttc |
281 |
Q |
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|||| ||||| |||||| | |||||||| |
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| T |
35029878 |
tcaccgtaaatgacaaaacttttgcttc |
35029905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 283
Target Start/End: Original strand, 35043986 - 35044175
Alignment:
| Q |
94 |
gcttggcctttaatcggccacctccacctcttaggtggttcccaacaaccttatatcaccttgggaaacttagccgacaaatacggagccatcttcaccg |
193 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||| | |||| || ||||||| || || ||||||| ||||||||| | ||||||||| |
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| T |
35043986 |
gcttggcctttgatcggccacctccacctcttaggtggatcccagccacctcatgtcaccttagggaagctagccgataaatacggacctatcttcacct |
35044085 |
T |
|
| Q |
194 |
tgcgtttaggtgttcatcgaactttagttgttagcagttgggaaattgctagacagtgtttcactgtaaacgacaaagcctttgcttctc |
283 |
Q |
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| T |
35044086 |
ttcgttttggtgttcacaaaacactagttataagcagttgtgaaatggcgaaacaatgcttcactgtaaacgatagagcctttgcttctc |
35044175 |
T |
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