View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11287_low_2 (Length: 638)
Name: NF11287_low_2
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 4 - 628
Target Start/End: Original strand, 47683754 - 47684374
Alignment:
| Q |
4 |
ccactaggctacttgacaaaattaataataataatgaataacaaaaatttgtattcttgctaattctagtgagccaaggatctgttccatattctcaggg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47683754 |
ccactaggctacttgacaaaattaataataataatgaataacaaaaatttgtattcttgg-aattctagtgagccaaggatctgttccatattctcaggg |
47683852 |
T |
|
| Q |
104 |
agtgagttaatttttctgttatttttgtaaaggtcttgttgtcttgttgatgtgtaatttataagtatatttgtgaagattttttgagtcttaaaatttg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47683853 |
agtgagttaatttttctgttatttttgtaaaggtcttgttgtcttgttgatgtgtaatttataagtatatttgtgaagattttttgagtcttaaaatttg |
47683952 |
T |
|
| Q |
204 |
tttggatcttcaaggattctcttcaaaaagtcaaatattacaaaagttgcaacttgcaatacattgaatttactgaattttataaaaactcactaataca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47683953 |
tttggatcttcaaggattctcttcaaaaagtcaaatattacaaaagttgtaacttgcaatacattgaatttactgaattttataaaaactcactaataca |
47684052 |
T |
|
| Q |
304 |
ctcgttgcattcccttaaaaattcacatttataaatgattaaaacaaaatttccttgggaggtttccttgaccatgatagagtactactgtgtttgaaaa |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47684053 |
gtcgttgcattcccttaaaaattcacatttataaatgattaaaacaaaatttccttgggaggtttccttgaccatgatagagtactactgtgtttgaaaa |
47684152 |
T |
|
| Q |
404 |
cctccatggctctatcttcttcttctcatctctccatggcttcgtttgcttccgacctgtccaccgctcctttactttcgaggtgtccatggttctttcc |
503 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47684153 |
cctccatggctcta---tcttcttctcatctctccatggcttcgtttccttccgacctgtccaccgctcctttactttcgatgtgtccatggttctttcc |
47684249 |
T |
|
| Q |
504 |
gatttgtattacacaagttttaatgtttttctcatttcgatctgacccatgtcatctctgtttcctttcaatctcgtctatgtttccttcagcaagtcat |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
47684250 |
gatttgtattacacaagttttaatgtttttctcgtttcgatctgacccatgtcatctctgtttcctttcaatctcgtctacgtttccttcagctagtcat |
47684349 |
T |
|
| Q |
604 |
gttgtctctgttttcttcccctttg |
628 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
47684350 |
gttgtctctgttttcttcccctttg |
47684374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 546 - 625
Target Start/End: Complemental strand, 28579596 - 28579517
Alignment:
| Q |
546 |
tgacccatgtcatctctgtttcctttcaatctcgtctatgtttccttcagcaagtcatgttgtctctgttttcttcccct |
625 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
28579596 |
tgacccatgttatctctgtttcctttcgatctcgtctatgtttccttatgttagtcatgttgtctctgtttccttcccct |
28579517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University