View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11287_low_24 (Length: 243)

Name: NF11287_low_24
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11287_low_24
NF11287_low_24
[»] chr5 (33 HSPs)
chr5 (1-92)||(18258674-18258765)
chr5 (1-87)||(26791130-26791216)
chr5 (1-85)||(33037619-33037703)
chr5 (2-85)||(28306020-28306103)
chr5 (1-86)||(5168282-5168367)
chr5 (20-87)||(1671660-1671727)
chr5 (23-88)||(39591801-39591866)
chr5 (23-88)||(39592193-39592258)
chr5 (1-85)||(7287077-7287161)
chr5 (1-85)||(14923172-14923256)
chr5 (1-84)||(1764323-1764406)
chr5 (96-151)||(34818630-34818685)
chr5 (149-204)||(34819565-34819620)
chr5 (20-86)||(35634722-35634788)
chr5 (1-87)||(36739047-36739133)
chr5 (23-88)||(7552852-7552917)
chr5 (1-86)||(14051202-14051287)
chr5 (20-85)||(41321373-41321438)
chr5 (23-87)||(17626107-17626171)
chr5 (1-84)||(13168621-13168704)
chr5 (23-89)||(22972238-22972304)
chr5 (22-87)||(1274478-1274542)
chr5 (20-77)||(7076464-7076521)
chr5 (20-88)||(28467338-28467406)
chr5 (20-82)||(2972442-2972504)
chr5 (24-85)||(15479591-15479652)
chr5 (23-87)||(8687012-8687076)
chr5 (23-83)||(39054708-39054768)
chr5 (20-84)||(42175037-42175101)
chr5 (23-86)||(3565205-3565268)
chr5 (23-88)||(13310004-13310069)
chr5 (23-87)||(4088565-4088629)
chr5 (197-226)||(34820499-34820528)
[»] chr4 (56 HSPs)
chr4 (1-88)||(51986141-51986228)
chr4 (1-88)||(26732324-26732411)
chr4 (1-87)||(23369218-23369304)
chr4 (1-87)||(26492106-26492192)
chr4 (1-87)||(44539833-44539919)
chr4 (1-86)||(5622557-5622642)
chr4 (1-82)||(24575742-24575823)
chr4 (20-85)||(53801647-53801712)
chr4 (25-93)||(37297171-37297239)
chr4 (1-85)||(46213069-46213153)
chr4 (23-88)||(29175346-29175411)
chr4 (23-87)||(2575676-2575740)
chr4 (1-85)||(15175645-15175729)
chr4 (23-87)||(34616682-34616746)
chr4 (1-85)||(43175083-43175167)
chr4 (1-87)||(10250401-10250487)
chr4 (1-86)||(26724859-26724944)
chr4 (1-86)||(36178005-36178090)
chr4 (20-88)||(11068806-11068874)
chr4 (1-85)||(38376378-38376462)
chr4 (23-87)||(38382442-38382506)
chr4 (1-85)||(39440583-39440667)
chr4 (23-87)||(39478558-39478622)
chr4 (23-87)||(47181962-47182026)
chr4 (23-87)||(48402083-48402147)
chr4 (28-86)||(27965111-27965169)
chr4 (20-88)||(31641450-31641518)
chr4 (23-87)||(39195178-39195242)
chr4 (23-87)||(56363931-56363995)
chr4 (23-86)||(27050973-27051036)
chr4 (23-88)||(37997375-37997440)
chr4 (23-85)||(5233558-5233620)
chr4 (24-85)||(7632349-7632410)
chr4 (23-88)||(19473841-19473906)
chr4 (20-77)||(38134471-38134528)
chr4 (20-85)||(39606090-39606155)
chr4 (23-95)||(50721622-50721694)
chr4 (1-94)||(1627434-1627530)
chr4 (24-77)||(3316476-3316529)
chr4 (23-84)||(56474656-56474717)
chr4 (23-87)||(11672009-11672073)
chr4 (23-79)||(45083093-45083149)
chr4 (26-82)||(49449036-49449092)
chr4 (45-88)||(515530-515573)
chr4 (23-86)||(50831642-50831705)
chr4 (46-85)||(53786103-53786142)
chr4 (20-87)||(53796774-53796841)
chr4 (20-85)||(38510661-38510724)
chr4 (34-91)||(40917967-40918025)
chr4 (50-87)||(2268405-2268442)
chr4 (1-46)||(29531533-29531578)
chr4 (29-86)||(39259080-39259137)
chr4 (23-87)||(47744398-47744463)
chr4 (23-87)||(39654945-39655009)
chr4 (23-87)||(42853698-42853762)
chr4 (49-85)||(46634235-46634271)
[»] chr3 (56 HSPs)
chr3 (1-88)||(27541387-27541474)
chr3 (1-85)||(47472428-47472512)
chr3 (1-86)||(52939750-52939835)
chr3 (1-85)||(32924169-32924253)
chr3 (20-88)||(38926746-38926814)
chr3 (1-88)||(44856052-44856139)
chr3 (1-87)||(52326118-52326204)
chr3 (1-81)||(5244328-5244408)
chr3 (1-85)||(16969454-16969538)
chr3 (1-85)||(36670902-36670986)
chr3 (1-85)||(42356972-42357056)
chr3 (1-85)||(44413283-44413367)
chr3 (10-85)||(13735838-13735913)
chr3 (1-87)||(44813235-44813321)
chr3 (20-85)||(26014930-26014995)
chr3 (1-90)||(37302645-37302734)
chr3 (1-85)||(19149089-19149173)
chr3 (20-88)||(33939356-33939424)
chr3 (23-87)||(35376967-35377031)
chr3 (1-91)||(52254020-52254110)
chr3 (23-88)||(13348019-13348084)
chr3 (20-85)||(37503635-37503700)
chr3 (21-85)||(7934093-7934157)
chr3 (23-87)||(21217633-21217697)
chr3 (20-84)||(24256660-24256724)
chr3 (20-84)||(35597280-35597344)
chr3 (23-87)||(37056943-37057007)
chr3 (1-88)||(5114177-5114264)
chr3 (20-82)||(42358529-42358591)
chr3 (1-87)||(46624006-46624092)
chr3 (20-86)||(55151604-55151670)
chr3 (1-62)||(20547901-20547962)
chr3 (23-84)||(23592579-23592640)
chr3 (23-84)||(23600714-23600775)
chr3 (20-89)||(31157561-31157630)
chr3 (1-86)||(41309216-41309301)
chr3 (31-88)||(42478086-42478145)
chr3 (23-87)||(44383310-44383374)
chr3 (29-88)||(7668073-7668132)
chr3 (1-88)||(44445393-44445480)
chr3 (26-88)||(25641468-25641530)
chr3 (23-85)||(42889106-42889168)
chr3 (24-85)||(288848-288909)
chr3 (23-84)||(28539629-28539690)
chr3 (24-82)||(8847232-8847289)
chr3 (23-84)||(35201323-35201384)
chr3 (23-83)||(44463478-44463538)
chr3 (23-87)||(51982220-51982284)
chr3 (23-86)||(39630504-39630567)
chr3 (23-81)||(11630642-11630700)
chr3 (50-87)||(33791668-33791705)
chr3 (1-46)||(41505590-41505635)
chr3 (23-56)||(45711356-45711389)
chr3 (1-46)||(50318316-50318361)
chr3 (46-86)||(50314773-50314813)
chr3 (62-90)||(52485633-52485661)
[»] chr1 (53 HSPs)
chr1 (1-87)||(27464943-27465029)
chr1 (1-85)||(26469458-26469542)
chr1 (1-88)||(649868-649955)
chr1 (20-87)||(45121367-45121434)
chr1 (1-91)||(23645510-23645600)
chr1 (1-87)||(31088280-31088366)
chr1 (20-88)||(19055644-19055712)
chr1 (1-86)||(33100907-33100992)
chr1 (23-88)||(45640422-45640487)
chr1 (20-85)||(48470757-48470822)
chr1 (1-81)||(35369799-35369879)
chr1 (1-85)||(44519039-44519123)
chr1 (23-88)||(18434916-18434981)
chr1 (23-87)||(30467419-30467483)
chr1 (1-85)||(37619643-37619727)
chr1 (1-85)||(50726136-50726220)
chr1 (1-88)||(37274918-37275005)
chr1 (20-79)||(50932422-50932481)
chr1 (23-85)||(19947632-19947694)
chr1 (24-86)||(31827073-31827135)
chr1 (28-85)||(2571762-2571819)
chr1 (10-79)||(3851266-3851335)
chr1 (20-85)||(8350087-8350151)
chr1 (20-81)||(40861154-40861215)
chr1 (1-82)||(45333810-45333891)
chr1 (23-85)||(48103250-48103313)
chr1 (20-86)||(52576188-52576255)
chr1 (23-85)||(3981914-3981976)
chr1 (26-87)||(9566846-9566907)
chr1 (1-85)||(44914459-44914544)
chr1 (23-88)||(50149067-50149132)
chr1 (23-87)||(21401519-21401583)
chr1 (23-87)||(46907316-46907380)
chr1 (28-79)||(6809706-6809757)
chr1 (23-88)||(43775327-43775392)
chr1 (31-88)||(50333337-50333394)
chr1 (24-88)||(40328654-40328718)
chr1 (23-85)||(26207962-26208024)
chr1 (1-86)||(30735180-30735265)
chr1 (23-84)||(49065253-49065314)
chr1 (24-84)||(9988074-9988134)
chr1 (1-85)||(15469945-15470028)
chr1 (28-87)||(2269458-2269517)
chr1 (24-79)||(26020970-26021025)
chr1 (49-88)||(41677221-41677260)
chr1 (28-86)||(49647038-49647096)
chr1 (1-42)||(3159475-3159516)
chr1 (23-88)||(18512228-18512293)
chr1 (50-87)||(29359773-29359810)
chr1 (23-84)||(30570645-30570706)
chr1 (39-76)||(47215755-47215791)
chr1 (1-85)||(37685428-37685512)
chr1 (1-85)||(37700006-37700090)
[»] chr7 (28 HSPs)
chr7 (1-85)||(38956506-38956590)
chr7 (1-89)||(3937007-3937095)
chr7 (1-85)||(44895460-44895544)
chr7 (1-86)||(43025439-43025524)
chr7 (23-85)||(40417895-40417957)
chr7 (24-85)||(41989628-41989689)
chr7 (23-87)||(46022153-46022217)
chr7 (10-84)||(32529745-32529819)
chr7 (23-89)||(43942753-43942819)
chr7 (1-86)||(24614203-24614288)
chr7 (1-86)||(40112841-40112926)
chr7 (23-87)||(7701665-7701729)
chr7 (1-85)||(22918057-22918141)
chr7 (23-86)||(3614333-3614396)
chr7 (1-88)||(25192802-25192889)
chr7 (23-86)||(35072249-35072312)
chr7 (28-86)||(35098590-35098648)
chr7 (20-86)||(41189428-41189496)
chr7 (20-85)||(45851095-45851160)
chr7 (32-86)||(46095083-46095137)
chr7 (26-83)||(32803813-32803870)
chr7 (23-84)||(38944918-38944979)
chr7 (23-86)||(31445439-31445502)
chr7 (23-88)||(20337432-20337497)
chr7 (23-88)||(33578201-33578266)
chr7 (1-46)||(38073319-38073364)
chr7 (23-80)||(44649221-44649278)
chr7 (28-85)||(46578023-46578080)
[»] chr6 (23 HSPs)
chr6 (1-85)||(552892-552976)
chr6 (1-85)||(14818031-14818115)
chr6 (20-88)||(15974726-15974794)
chr6 (1-89)||(33430246-33430334)
chr6 (23-86)||(32316815-32316878)
chr6 (23-90)||(34047508-34047575)
chr6 (23-88)||(26595470-26595535)
chr6 (23-87)||(16199571-16199635)
chr6 (1-85)||(31077893-31077977)
chr6 (23-89)||(18737451-18737517)
chr6 (1-86)||(1156819-1156904)
chr6 (23-85)||(22079451-22079513)
chr6 (23-87)||(4820488-4820552)
chr6 (1-84)||(11612287-11612370)
chr6 (30-85)||(17551267-17551322)
chr6 (20-85)||(5694039-5694104)
chr6 (20-85)||(13689882-13689947)
chr6 (23-90)||(24900895-24900962)
chr6 (34-88)||(91793-91847)
chr6 (23-85)||(277112-277174)
chr6 (30-86)||(30457633-30457689)
chr6 (23-93)||(31883183-31883253)
chr6 (28-73)||(11014890-11014935)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-88)||(76504-76591)
[»] chr2 (44 HSPs)
chr2 (1-88)||(9760117-9760204)
chr2 (1-88)||(18254094-18254181)
chr2 (1-84)||(9207689-9207772)
chr2 (1-87)||(22888703-22888789)
chr2 (2-88)||(42421783-42421869)
chr2 (1-87)||(1248785-1248871)
chr2 (1-87)||(43487478-43487564)
chr2 (1-82)||(6049236-6049317)
chr2 (23-87)||(2076690-2076754)
chr2 (24-88)||(21611540-21611604)
chr2 (20-88)||(32477450-32477518)
chr2 (20-86)||(37737858-37737924)
chr2 (20-86)||(41195702-41195768)
chr2 (20-85)||(3838768-3838833)
chr2 (20-89)||(9990809-9990878)
chr2 (20-82)||(42091393-42091457)
chr2 (23-87)||(3097747-3097811)
chr2 (20-88)||(9647250-9647318)
chr2 (23-87)||(13333056-13333120)
chr2 (1-88)||(9194340-9194427)
chr2 (23-84)||(41056636-41056697)
chr2 (23-87)||(25270468-25270532)
chr2 (20-88)||(41042372-41042440)
chr2 (23-86)||(27490617-27490680)
chr2 (1-84)||(34944979-34945062)
chr2 (1-85)||(7698270-7698354)
chr2 (23-87)||(8848583-8848647)
chr2 (10-85)||(19633390-19633466)
chr2 (10-85)||(19830291-19830367)
chr2 (30-85)||(42434247-42434302)
chr2 (23-84)||(29349627-29349688)
chr2 (45-87)||(42340641-42340683)
chr2 (36-89)||(5054056-5054109)
chr2 (24-86)||(136049-136108)
chr2 (23-87)||(1352510-1352574)
chr2 (24-88)||(16973646-16973710)
chr2 (51-85)||(17388503-17388537)
chr2 (24-86)||(18846733-18846795)
chr2 (26-84)||(28494984-28495042)
chr2 (1-46)||(17388530-17388575)
chr2 (50-87)||(22416349-22416386)
chr2 (24-85)||(32701212-32701273)
chr2 (1-73)||(19108993-19109065)
chr2 (54-86)||(37078134-37078166)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-88)||(8767-8854)
[»] chr8 (27 HSPs)
chr8 (1-85)||(22719539-22719623)
chr8 (20-87)||(12898815-12898882)
chr8 (1-87)||(27325857-27325943)
chr8 (23-86)||(11253429-11253492)
chr8 (1-88)||(37449310-37449397)
chr8 (1-82)||(32501087-32501168)
chr8 (1-86)||(34186706-34186791)
chr8 (23-88)||(37133747-37133812)
chr8 (1-85)||(4054174-4054258)
chr8 (23-86)||(29025381-29025444)
chr8 (20-86)||(24479341-24479407)
chr8 (20-85)||(42768322-42768387)
chr8 (23-82)||(36816507-36816566)
chr8 (1-88)||(43397880-43397967)
chr8 (1-79)||(36251425-36251503)
chr8 (1-79)||(5277393-5277471)
chr8 (24-85)||(7271972-7272033)
chr8 (23-84)||(36660339-36660400)
chr8 (22-86)||(10692551-10692615)
chr8 (24-84)||(32133445-32133505)
chr8 (23-85)||(23754594-23754656)
chr8 (23-87)||(10839368-10839432)
chr8 (23-91)||(36969556-36969624)
chr8 (30-85)||(7598836-7598891)
chr8 (23-94)||(13106601-13106672)
chr8 (50-87)||(31249422-31249459)
chr8 (1-46)||(31249451-31249496)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-85)||(49394-49478)
[»] scaffold0519 (1 HSPs)
scaffold0519 (23-86)||(11903-11966)
[»] scaffold0148 (1 HSPs)
scaffold0148 (29-89)||(20785-20845)
[»] scaffold0087 (1 HSPs)
scaffold0087 (23-94)||(53240-53311)
[»] scaffold0184 (1 HSPs)
scaffold0184 (46-86)||(16676-16716)
[»] scaffold0078 (1 HSPs)
scaffold0078 (46-86)||(56128-56168)


Alignment Details
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 18258765 - 18258674
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaat 92  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  18258765 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctttcaat 18258674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26791216 - 26791130
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||| | || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  26791216 ttttgtgccactaactcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 26791130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 33037619 - 33037703
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  33037619 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 33037703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 28306103 - 28306020
Alignment:
Q  2 tttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||| |||||| || || |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  28306103 tttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 28306020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5168282 - 5168367
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| |||||| || || |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  5168282 ttttgtgccactacctcattttctttgtaaaattttagttgtcacaaaagttgtcatatatatgaatgttcaaataacacaactct 5168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 1671660 - 1671727
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  1671660 ttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 1671727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 39591801 - 39591866
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  39591801 ctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39591866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 39592193 - 39592258
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  39592193 ctttgtaaaactttggttgtcacaaaggttgtcatataaatagatgttcaaataacacaactcttt 39592258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7287161 - 7287077
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || || |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  7287161 ttttgtgtcactacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 7287077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14923172 - 14923256
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||| ||||||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||    
T  14923172 ttttgtgccactacctcatttcttttgtaaaattttggttttcacgaaagttgtcacatatatcgatgttcaaataacacaactc 14923256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 1764323 - 1764406
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||| ||| |||||| || ||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||    
T  1764323 ttttatgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaact 1764406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 151
Target Start/End: Original strand, 34818630 - 34818685
Alignment:
Q  96 aataaacaaagacaaagagttgtacgttcccaaggaataaagacattgacaaaaaa 151  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34818630 aataaacaaagacaaagagttgtatgttcccaaggaataaagacattgacaaaaaa 34818685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 34819565 - 34819620
Alignment:
Q  149 aaatattaatgccgggatcaaatgaatcaacaattgagaagaagatattttgttat 204  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34819565 aaatattaataccgggatcaaatgaatcaacaattgagaagaagatattttgttat 34819620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 35634788 - 35634722
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||    
T  35634788 ttcctttgtaaaattttggttatcataaaagttgtcacatatatggatgttcaaataacacaactct 35634722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 36739047 - 36739133
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||  |||||| || ||| |||||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||||    
T  36739047 ttttgtgtcactacctcatttcttttgtaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactctt 36739133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 7552917 - 7552852
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||    
T  7552917 ctttgcaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactcttt 7552852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14051287 - 14051202
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| |||||| || || |||||||||||||||||||||||||||||| ||| |||||| ||||||  ||||||||||||||    
T  14051287 ttttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttatcacatatatggatgtttgaataacacaactct 14051202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 41321373 - 41321438
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||| |||||||||||||||||    
T  41321373 ttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatattcaaataacacaactc 41321438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 17626107 - 17626171
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  17626107 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 17626171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 13168621 - 13168704
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||| |||| | || |||||||||||||||||| |||||||||||||||||| ||||||  ||||| |||||||||||||    
T  13168621 ttttgtgccactatctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatgaatgttgaaataacacaact 13168704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 22972238 - 22972304
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||||||||| |||||| |||||||||| ||||| || |||||||||||||||||||||||||    
T  22972238 ctttgtaaaattttagttgtctcaaaagttgttatataaatggatgttcaaataacacaactctttc 22972304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 1274478 - 1274542
Alignment:
Q  22 cctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||||||||||    
T  1274478 cctttgtaaaattttggttg-cataaaagttgtcacatatatggatgttcaaataacacaactctt 1274542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 7076521 - 7076464
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataa 77  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||    
T  7076521 ttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataa 7076464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 28467406 - 28467338
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||  ||||||| |||||||||||||||    
T  28467406 ttcctttataaaattttggttgtcacaaaaattgtcacatatatgaatgttcagataacacaactcttt 28467338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 2972442 - 2972504
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||| || |||||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  2972442 ttccttcgtgaaattttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaa 2972504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 15479591 - 15479652
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||  |||||||||||||||||| || ||| |||||||||||||||||||||    
T  15479591 tttgtaaaattttaattgtcacaaaagttgtcacatttatggatgttcaaataacacaactc 15479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 8687012 - 8687076
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||| |||| | ||||||||||| ||||||  ||||||||||||||| ||||||    
T  8687012 ctttgtaaaattttgattgttataaaagttgtcacatatatgaatgttcaaataacactactctt 8687076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 39054708 - 39054768
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaac 83  Q
    ||||| ||||||||| || |||||||||||||||| || || |||||||||||||||||||    
T  39054708 ctttgcaaaattttgattatcacaaaagttgtcatctaaatggatgttcaaataacacaac 39054768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 42175037 - 42175101
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||| ||||||||||  ||||| |||||||| || |||||| ||||||||||||||||||||    
T  42175037 ttcctttataaaattttgactgtcataaaagttgacacatatatcgatgttcaaataacacaact 42175101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 3565205 - 3565268
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||||| ||||||||||||   |  | ||||||||||||||||||||||    
T  3565205 ctttgtaaaattttggttgtctcaaaagttgtcactcaagtggatgttcaaataacacaactct 3565268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 13310004 - 13310069
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||| |||| ||||| ||||| ||||||| || || |||||||||||||||||| |||||    
T  13310004 ctttgtaaaaatttgattgtctcaaaaattgtcatctaaatggatgttcaaataacacaattcttt 13310069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 4088565 - 4088629
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||| | || |||||||| | ||||||| | | ||||||||||||||||||||||||||    
T  4088565 ctttgtaaaaatatgattgtcacataggttgtcaaaaaaatagatgttcaaataacacaactctt 4088629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Original strand, 34820499 - 34820528
Alignment:
Q  197 tttgttattgtgtaatggctaacgagtact 226  Q
    ||||||||||||||||||||||||||||||    
T  34820499 tttgttattgtgtaatggctaacgagtact 34820528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 51986141 - 51986228
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  51986141 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 51986228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26732324 - 26732411
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || || |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  26732324 ttttgtgccactacctcattttctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 26732411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 23369304 - 23369218
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||| || ||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  23369304 ttttgtgccactacctcatttcctttgtaagattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 23369218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 26492106 - 26492192
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||  || |||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26492106 ttttgtgccactacttcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatagatgttcaaataacacaactctt 26492192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44539833 - 44539919
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||    
T  44539833 ttttgtgacactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactctt 44539919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5622557 - 5622642
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| || ||||||||||||||||| ||| ||||||||||||| | |||||||||| ||||||||||||||||||    
T  5622557 ttttgtgcaactacctcatttcctttgtaaaattttagttatcacaaaagttgtgacatatatagatcttcaaataacacaactct 5622642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 24575823 - 24575742
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||| | |||| || ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  24575823 ttttgtgccaatacctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaa 24575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 53801712 - 53801647
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  53801712 ttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 53801647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 37297171 - 37297239
Alignment:
Q  25 ttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaata 93  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||    
T  37297171 ttgtaaaattttggttgtcacaaaagttgtcaaatatatggatgttcaaataacacaactcttacaata 37297239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 46213069 - 46213153
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||||||| ||| |||||| ||| |||||||||||||||||    
T  46213069 ttttgtgcaactacctcatttcctttgtaaaattttggttgttacaaaagttttcacatatatggattttcaaataacacaactc 46213153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 29175346 - 29175411
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  29175346 ctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 29175411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2575740 - 2575676
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2575740 ctttgtaaaactttagttgtcacaaaagttgtcatataaatagatgttcaaataacacaactctt 2575676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15175645 - 15175729
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| | |||| || ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||    
T  15175645 ttttgtgctaatacctcatttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataatacaactc 15175729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 34616682 - 34616746
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  34616682 ctttataaaattttggttgtctcaaaagttgtcatataaatagatgttcaaataacacaactctt 34616746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 43175083 - 43175167
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || |||||||||||||||||| || ||||||||||||||| |||||| |||||||||||||||||||||    
T  43175083 ttttgtgtcactacctcatttcctttgtaaaattttgattatcacaaaagttgtcacatatatggatgttcaaataacacaactc 43175167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 10250487 - 10250401
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||  || || |||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||| ||||    
T  10250487 ttttgtgccactacttcattttctttgtaaaattttggttgtcacaaaagttgtcgcatatatggatgttcaaataacacaattctt 10250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26724944 - 26724859
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||  |||||| || ||||||||||||||||| ||||| ||||||||| ||| |||||| ||||||||||||||||||||||    
T  26724944 ttttgtgtcactacctcatttcctttgtaaaattttagttgttacaaaagttatcacatatatggatgttcaaataacacaactct 26724859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 36178005 - 36178090
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||| | |||||| || ||||||| ||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  36178005 ttttgtaccactacctcatttcctttataaaattttagttgtcacaaaagttatcacatatataaatgttcaaataacacaactct 36178090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 11068806 - 11068874
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||| |||||    
T  11068806 ttcctttgtaaaattttggttgccacaaaagttgtcacatatatgaatgttcaaataacacaattcttt 11068874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38376462 - 38376378
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||| | || || ||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  38376462 ttttgtgccactatctcattttctttgtaaaattttgattgtcacaaaaattatcacatatatagatgttcaaataacacaactc 38376378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 38382442 - 38382506
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  38382442 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 38382506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 39440583 - 39440667
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||| |||||||||| |||||||||||||||||| ||||||  ||||||||||||||||||||    
T  39440583 ttttgtgtcactacctcatttcctttctaaaattttgattgtcacaaaagttgtcacatatatgaatgttcaaataacacaactc 39440667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39478558 - 39478622
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||    
T  39478558 ctttgtaaaattttggttgtcacaaaagttgtcatatatatggatgtttaataaacacaactctt 39478622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 47181962 - 47182026
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  47181962 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 47182026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 48402147 - 48402083
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  48402147 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 48402083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 27965111 - 27965169
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  27965111 taaaattttggttgtcacagaagttgtcacatatatggatgttcaaataacacaactct 27965169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 31641518 - 31641450
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||| ||||||||||||||||||||||||| |||  |||||  |||||||||||||||||||||||    
T  31641518 ttcctttataaaattttggttgtcacaaaagttatcacgtatatgaatgttcaaataacacaactcttt 31641450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39195178 - 39195242
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||| |||| || ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39195178 ctttgtaaaactttgattatcacaaatgttgtcatataaatagatgttcaaataacacaactctt 39195242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 56363995 - 56363931
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| ||||||||||||| || || |||||||||||||||||||||||    
T  56363995 ctttataaaattttggttgtctcaaaagttgtcatgtaaatggatgttcaaataacacaactctt 56363931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 27051036 - 27050973
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||||||||||||||||||||| || |||  |||||||||||||||| ||||    
T  27051036 ctttgtaaaattttggttgtcacaaaagttgtcacatttatgaatgttcaaataacacatctct 27050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 37997375 - 37997440
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||| |||||| || ||| ||||||||||||||||||| |||| ||||||    
T  37997375 ctttgtaaaattttggttgtaacaaaaattatcacatatatagatgttcaaatagcacagctcttt 37997440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 5233620 - 5233558
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||| ||||  |||||||||| | ||| ||||||||||||||||||||||||    
T  5233620 ctttgtaaaattttgattgtttcaaaagttgttacataaatagatgttcaaataacacaactc 5233558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7632410 - 7632349
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||||||  |||| ||||||||||| |  |||||||||||||||||||||    
T  7632410 tttgtaaaattttggttgttgcaaaggttgtcatataaaatgatgttcaaataacacaactc 7632349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 19473906 - 19473841
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||| ||||| |||||||||||||||| ||  || |||||||||||||| |||||    
T  19473906 ctttgtaaaattttgattgtctcaaaagttgtcatataaatgcatcttcaaataacacaaatcttt 19473841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 38134471 - 38134528
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataa 77  Q
    ||||||||||||||||||||| ||||||||||||||| || |||  ||||||||||||    
T  38134471 ttcctttgtaaaattttggttatcacaaaagttgtcacatgtatgaatgttcaaataa 38134528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 39606090 - 39606155
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||| ||||||||||||| ||  ||||||||||| ||||||| |||||||||||| |||||||    
T  39606090 ttcctttataaaattttggttatcgtaaaagttgtcacatatataaatgttcaaataatacaactc 39606155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 50721694 - 50721622
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaatatg 95  Q
    |||||||||||||| |||||  |||| ||||||||||| |  |||||||||||||||||||||| | ||||||    
T  50721694 ctttgtaaaattttagttgttgcaaaggttgtcatataaaatgatgttcaaataacacaactctattaatatg 50721622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 1627530 - 1627434
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaa---aagttgtcatatatatagatgttcaaataacacaactctttcaatat 94  Q
    |||||||| | |||| || || ||||||||| || ||||||||||||   ||||||||||  | |||| |||||||||||||||||||||| |||||    
T  1627530 ttttgtgccaatacctcattttctttgtaaatttatggttgtcacaacaaaagttgtcatccaaatagttgttcaaataacacaactcttttaatat 1627434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 3316476 - 3316529
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataa 77  Q
    |||||||||||||| ||||| ||||||||||||| || || |||||||||||||    
T  3316476 tttgtaaaattttgattgtctcaaaagttgtcatctaaatggatgttcaaataa 3316529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 56474717 - 56474656
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||| ||||||||||| ||||| |||| || |  |||||||||||||||||||||||    
T  56474717 ctttgtaaagttttggttgtctcaaaaattgttatgtgaatagatgttcaaataacacaact 56474656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 11672073 - 11672009
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||   ||||||||||||||| ||||| |||||| ||||||||||||| |||||    
T  11672073 ctttataaaattttaagtgtcacaaaagttgtaatataaatagattttcaaataacacatctctt 11672009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 45083093 - 45083149
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||| |||||||||| |||| | ||||||||||| |||||| |||||||||||||||    
T  45083093 ctttataaaattttgattgtaataaaagttgtcacatatatggatgttcaaataaca 45083149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 49449092 - 49449036
Alignment:
Q  26 tgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    ||||||||||||||||||  ||||||||||||||| ||  ||||| |||||||||||    
T  49449092 tgtaaaattttggttgtcttaaaagttgtcatataaatgaatgtttaaataacacaa 49449036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 515573 - 515530
Alignment:
Q  45 caaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||| ||| || ||||||||||||||||||||    
T  515573 caaaagttgtcatataaataaatattcaaataacacaactcttt 515530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 50831705 - 50831642
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||| |||||||| ||||||||||||   | || | ||||||||||||||||||||    
T  50831705 ctttgtaaaattatggttgtcccaaaagttgtcaatcaaatggttgttcaaataacacaactct 50831642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 53786142 - 53786103
Alignment:
Q  46 aaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  53786142 aaaagttgtcacatatatggatgttcaaataacacaactc 53786103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 53796774 - 53796841
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||| |  ||||||||||||||||||||||  |  ||| ||||||||||||||| |||||    
T  53796774 ttcctttgtaaattagtggttgtcacaaaagttgtcattcaattagttgttcaaataacacagctctt 53796841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 38510724 - 38510661
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||| |||||||||| ||||||||||| || ||  ||||||| ||||| ||||||||||||||    
T  38510724 ttcctttataaaattttgattgtcacaaaaattatc--atatataaatgttgaaataacacaactc 38510661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 40918025 - 40917967
Alignment:
Q  34 tttggttgtcacaaaagttgtcatatatatagatgttcaaat-aacacaactctttcaa 91  Q
    |||||||||| |||||||||||||||| |||| ||||||| | |||||| |||||||||    
T  40918025 tttggttgtctcaaaagttgtcatatagatagttgttcaagtaaacacagctctttcaa 40917967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 2268442 - 2268405
Alignment:
Q  50 gttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  2268442 gttgtcacatatatggatgttcaaataacacaactctt 2268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29531578 - 29531533
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||||  |||||| || |||||||||||||||||||||||||||    
T  29531578 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcaca 29531533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 39259080 - 39259137
Alignment:
Q  29 aaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||  ||||||||||| ||||||| || || ||| ||||||||||||||||||    
T  39259080 aaaattttaattgtcacaaaaattgtcatctaaatggatattcaaataacacaactct 39259137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 47744463 - 47744398
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtca-tatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||| |||||||| |||||||| ||| |  | |||| |||||||||||||||||||||    
T  47744463 ctttgtaaaattatggttgtcccaaaagttatcaatcaaaatagttgttcaaataacacaactctt 47744398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39654945 - 39655009
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||| || ||||||||  |||| || |||| || |||| |||||||||||||||||||||    
T  39654945 ctttgtaaatttatggttgtcttaaaaattatcatctaaatagttgttcaaataacacaactctt 39655009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 42853698 - 42853762
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||| ||||| ||||| ||||||   | || |||||||||||||||||||||||    
T  42853698 ctttataaaattttgattgtctcaaaaattgtcactcaaatggatgttcaaataacacaactctt 42853762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 46634235 - 46634271
Alignment:
Q  49 agttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| |||||||||||||||||||||    
T  46634235 agttgtcacatatatggatgttcaaataacacaactc 46634271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 56)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27541474 - 27541387
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27541474 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 27541387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 47472428 - 47472512
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  47472428 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacataactc 47472512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 52939750 - 52939835
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| |||||| || |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||    
T  52939750 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactct 52939835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 32924253 - 32924169
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  32924253 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 32924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 38926746 - 38926814
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  38926746 ttcctttgtaaaattttggttgtcacgaaagttgtcacatatatagatgttcaaataacacaactcttt 38926814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44856052 - 44856139
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || ||||||||||||||||||||||||| | ||||||||| |||||| ||||||||||||||||||||||||    
T  44856052 ttttgtgccactacctcatttcctttgtaaaattttggttgtcatacaagttgtcacatatatggatgttcaaataacacaactcttt 44856139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 52326118 - 52326204
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||  |||| || |||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||    
T  52326118 ttttgtgcacttacctcatttcctttgtaaaattttgattgtcataaaagttgtcatatatatggatgttcaaataacacaactctt 52326204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5244328 - 5244408
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacaca 81  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  5244328 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatataaatgttcaaataacaca 5244408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16969538 - 16969454
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||| ||| |||||| || ||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  16969538 ttttatgccactacctcatttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 16969454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 36670986 - 36670902
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||| ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  36670986 ttttgtgccactacctcatttcatttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactc 36670902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42357056 - 42356972
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || |||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  42357056 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 42356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44413367 - 44413283
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| | |||| || |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  44413367 ttttgtgccaatacctcatttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagatgttcaaataacacaactc 44413283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 13735838 - 13735913
Alignment:
Q  10 actaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  13735838 actacctcatttcctttgcaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 13735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44813235 - 44813321
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| ||||||  | |||||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||||    
T  44813235 ttttgtgccactacctaatttcctttgtaaaattttgattgccacaaaagttgtcacatatatagatgttcaaatcacacaactctt 44813321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 26014930 - 26014995
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||    
T  26014930 ttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatagatgtttaaataacacaactc 26014995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 37302645 - 37302734
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttca 90  Q
    |||||||| |||||| || |||||||| ||||||||| |||||||||||||||||| || ||| ||||||||||||| ||||||||||||    
T  37302645 ttttgtgccactacctcatttcctttgcaaaattttgattgtcacaaaagttgtcaaatgtatggatgttcaaataagacaactctttca 37302734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 19149089 - 19149173
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||| | || |||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||    
T  19149089 ttttgtgccactaactcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 19149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 33939356 - 33939424
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| | |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  33939356 ttcctttgaataattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 33939424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 35377031 - 35376967
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  35377031 ctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttcaaataacacaactctt 35376967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52254110 - 52254020
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaa 91  Q
    |||||||  |||||| || ||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||| ||||    
T  52254110 ttttgtgtcactacctcatttcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaatgacacaactctatcaa 52254020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 13348084 - 13348019
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||| ||||||||    
T  13348084 ctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataacataactcttt 13348019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 37503700 - 37503635
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  37503700 ttcctttgcaaaattttggttgtcacaaaagttatcacatatataaatgttcaaataacacaactc 37503635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 7934093 - 7934157
Alignment:
Q  21 tcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||    
T  7934093 tcctttgtaaaattttagttgtcacaaaaattgtcacatatatggatgttcaaataacacaactc 7934157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 21217633 - 21217697
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  21217633 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 21217697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 24256724 - 24256660
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||| ||||||||||||||||    
T  24256724 ttcctttgtaaaattttaattgtcacaaaagttgtcacatatatagattttcaaataacacaact 24256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 35597280 - 35597344
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||||||||||    
T  35597280 ttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatattcaaataacacaact 35597344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 37057007 - 37056943
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  37057007 ctttgtaaaatattggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 37056943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 5114177 - 5114264
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||  |||||| || || ||||||||||||||| |||||| |||| |||||| ||| |||||||||||||||||||||||||||    
T  5114177 ttttgtgtcactacctcattttctttgtaaaattttgattgtcataaaaattgtcacataaatagatgttcaaataacacaactcttt 5114264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 42358591 - 42358529
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  42358591 ttcctttgcaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 42358529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 46624006 - 46624092
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||  |||||| || || ||||||||||||||| |||||||||||||| ||| || ||| |||||||||||||||||||||||    
T  46624006 ttttgtgtcactacctcattttctttgtaaaattttgattgtcacaaaagttatcacatgtatggatgttcaaataacacaactctt 46624092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 55151670 - 55151604
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||||  |||| ||||||||||||| ||||||| |||||||||||||||||||||    
T  55151670 ttcctttgtaaaattttaattgtaacaaaagttgtcacatatataaatgttcaaataacacaactct 55151604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20547962 - 20547901
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatata 62  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||    
T  20547962 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatata 20547901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 23592579 - 23592640
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  23592579 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 23600714 - 23600775
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  23600714 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 31157630 - 31157561
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||||||||||||| | |||||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  31157630 ttcctttgtaaaattttgatagtcacagaagttatcacatatatggatgttcaaataacacaactctttc 31157561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41309216 - 41309301
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||  |||||| || || ||||||||||||||| |||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  41309216 ttttgtgtcactacctcattttctttgtaaaattttgattgtcacaaaagttatcgcatatatggatgttcaaataacacaactct 41309301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 42478086 - 42478145
Alignment:
Q  31 aattttggttgtcacaaaagttgtcatatatata--gatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  42478086 aattttggttgtcacaaaagttatcatatatatatggatgttcaaataacacaactcttt 42478145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 44383310 - 44383374
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||    
T  44383310 ctttataaaattttgattgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 44383374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 7668132 - 7668073
Alignment:
Q  29 aaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||| |||||    
T  7668132 aaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaattcttt 7668073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44445393 - 44445480
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||| || | || || |||| ||||||||||||||||| ||||||||| | |||||| ||||||||||||||| ||||||||    
T  44445393 ttttgtgcaaatatctcattttctttataaaattttggttgtcataaaagttgttacatatatcgatgttcaaataacataactcttt 44445480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 25641530 - 25641468
Alignment:
Q  26 tgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||| |||||||||| |||||||||||||||| || ||||||||||||| ||||||||||    
T  25641530 tgtaaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataatacaactcttt 25641468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 42889106 - 42889168
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||||| |  ||||||||||||| || ||||||||| ||||||||||||||    
T  42889106 ctttgtaaaattttggttatatcaaaagttgtcatctaaatagatgtttaaataacacaactc 42889168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 288848 - 288909
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||| |||| |||| |||||||| |||||| ||| |||||||||||||||||    
T  288848 tttgtaaaattttgattgttacaatagttgtcacatatatggattttcaaataacacaactc 288909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 28539690 - 28539629
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||| |||||||||||| ||||||||||| |||| || || ||||||||||||||||||||    
T  28539690 ctttgcaaaattttggttatcacaaaagttatcatctaaatggatgttcaaataacacaact 28539629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 8847232 - 8847289
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||    
T  8847232 tttgtaaaattttgattatcacaaaagttgt-acatatatggatgttcaaataacacaa 8847289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 35201384 - 35201323
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||| ||||||  ||||| ||||||||||||| || || ||||||||||||||||||||    
T  35201384 ctttgtataattttaattgtctcaaaagttgtcatttaaatggatgttcaaataacacaact 35201323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 44463478 - 44463538
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaac 83  Q
    ||||||||||||||| || || |||||||| |||||||  | |||||||||||||||||||    
T  44463478 ctttgtaaaattttgattatctcaaaagttatcatataatttgatgttcaaataacacaac 44463538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 51982220 - 51982284
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| ||||||||| |||||| ||||| |||| ||||| || ||| |||||||||||||||||||    
T  51982220 ctttataaaattttagttgtctcaaaaattgttatataaatggattttcaaataacacaactctt 51982284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 39630567 - 39630504
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| |||||  |||| || | ||||| |||||||||||||||||| ||||||    
T  39630567 ctttgtaaaattttgattgtcttaaaaattattatataaatagatgttcaaataacaaaactct 39630504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 11630700 - 11630642
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacaca 81  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||  ||||||||||||||||    
T  11630700 ctttgtaaaattttaattgtctcaaaaattgtcatataaatgaatgttcaaataacaca 11630642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 33791705 - 33791668
Alignment:
Q  50 gttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||| || |||||||||||||||||||||||    
T  33791705 gttgtcatataaatggatgttcaaataacacaactctt 33791668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41505590 - 41505635
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||||  |||||| || |||||||||||||||||||||||||||    
T  41505590 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcaca 41505635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 45711389 - 45711356
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtca 56  Q
    |||||||||||||||||||| |||||||||||||    
T  45711389 ctttgtaaaattttggttgttacaaaagttgtca 45711356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 50318361 - 50318316
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||||| |||| | || |||||||||||||||||||||||||||    
T  50318361 ttttgtgccactatctcatttcctttgtaaaattttggttgtcaca 50318316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 50314773 - 50314813
Alignment:
Q  46 aaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| |||||| ||||||||||||| ||||    
T  50314773 aaaagttgtcatataaatagatattcaaataacacatctct 50314813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 90
Target Start/End: Original strand, 52485633 - 52485661
Alignment:
Q  62 atagatgttcaaataacacaactctttca 90  Q
    |||||||||||||||||||||||||||||    
T  52485633 atagatgttcaaataacacaactctttca 52485661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 53)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 27465029 - 27464943
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  27465029 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 27464943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26469458 - 26469542
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  26469458 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 26469542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 649868 - 649955
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||    
T  649868 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatgtggatgttcaaataacacaactcttt 649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 45121434 - 45121367
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  45121434 ttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 45121367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 23645510 - 23645600
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaa 91  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||| |||||||||||    
T  23645510 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatgtatgttcaaataacataactctttcaa 23645600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31088280 - 31088366
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||| || ||  ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  31088280 ttttgtgccactacctcattttttttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 31088366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 19055712 - 19055644
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19055712 ttcctttgtaaaattttagttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 19055644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 33100907 - 33100992
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||  |||||| || ||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||    
T  33100907 ttttgtgtcactacctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactct 33100992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 45640422 - 45640487
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||    
T  45640422 ctttgtaaaattttggttgcaacaaaagttgtcacatatatagatgttcaaataacacaactcttt 45640487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 48470757 - 48470822
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  48470757 ttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 48470822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35369799 - 35369879
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacaca 81  Q
    |||||||  |||||| || ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  35369799 ttttgtgtcactacctcatttcctttataaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacaca 35369879  T

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Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44519123 - 44519039
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| | |||| || ||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||    
T  44519123 ttttgtgctaatacctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatgaatgttcaaataacacaactc 44519039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 18434916 - 18434981
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||| ||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||||    
T  18434916 ctttgcaaaattttggttgtcacaaaagttgtcatctaaatagattttcaaataacacaactcttt 18434981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 30467483 - 30467419
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||| ||| |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  30467483 ctttgtaaaactttagttgtcacaaaagttgtcatataattagatgttcaaataacacaactctt 30467419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37619643 - 37619727
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| | |||| || ||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||||||| |||||    
T  37619643 ttttgtgccaatacctcatttcctttgtaaaattttggttgtaataaaagttgtcacatatatggatgttcaaataacataactc 37619727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 50726220 - 50726136
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || || ||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||    
T  50726220 ttttgtgccactacctcattttctttgcaaaattttggttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 50726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37275005 - 37274918
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||  |||||| || |||||||| ||||||||| |||||||||||||||||| || ||  ||||||||||||||||||||||||    
T  37275005 ttttgtgtcactacctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtaaggatgttcaaataacacaactcttt 37274918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 50932422 - 50932481
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||    
T  50932422 ttcctttgtaaaattttggttgtaacaaaagttgtcacatatatggatgttcaaataaca 50932481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 19947694 - 19947632
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||| |||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  19947694 ctttataaaattttggttgtctcaaaagttgtcatataaataaatgttcaaataacacaactc 19947632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 31827073 - 31827135
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||||||  ||||||||||||| || |||||||||||||||||||||||||    
T  31827073 tttgtaaaattttggttgtatcaaaagttgtcatctaaatagatgttcaaataacacaactct 31827135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 2571762 - 2571819
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||    
T  2571762 taaaattttggttgtcacaaaagttgtcatatgcatggatgttcaaataacacaactc 2571819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 3851266 - 3851335
Alignment:
Q  10 actaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||||| || ||||||| ||||||||||||||||| ||||||||||| |||||| |||||||||||||||    
T  3851266 actacctcatttcctttataaaattttggttgtcataaaagttgtcacatatatggatgttcaaataaca 3851335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 8350151 - 8350087
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  8350151 ttcctttgtaaa-ttttggttgtcacgaaagttgtcacatatatggatgttcaaataacacaactc 8350087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 40861215 - 40861154
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacaca 81  Q
    ||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  40861215 ttcctttataaaattttagttgtcacaaaagttgacacatatatagatgttcaaataacaca 40861154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 45333810 - 45333891
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||  |||||| || |||||||||||||||||  ||||||||||| || ||| |||||||||||||||||||||||||    
T  45333810 ttttgtgtcactacctcatttcctttgtaaaattttaattgtcacaaaaattatcacatatatagatgttcaaataacacaa 45333891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 48103313 - 48103250
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatg-ttcaaataacacaactc 85  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||||||||    
T  48103313 ctttgtaaaattttggttgtctcaaaagttgtcatataaatagatgtttcaaatatcacaactc 48103250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 52576255 - 52576188
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatat-agatgttcaaataacacaactct 86  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |  ||||||||||||||||||||    
T  52576255 ttcctttgtaaaattttggttgtcacaaaagttgtcacctatatgaattgttcaaataacacaactct 52576188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 3981976 - 3981914
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||| |||||||||| ||||||| || ||| |||||||||||||||||||||    
T  3981976 ctttgtaaaattttgattgtcacaaatgttgtcacatttatggatgttcaaataacacaactc 3981914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 9566907 - 9566846
Alignment:
Q  26 tgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||||||| ||||||||||||||||  |  ||||||||||||||||||||||    
T  9566907 tgtaaaattttggttgtctcaaaagttgtcatataattgaatgttcaaataacacaactctt 9566846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44914544 - 44914459
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaag-ttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || |||||||||||||||||| ||||| |||||  |||||| |||||| |||||||||||||||||||||    
T  44914544 ttttgtgtcactacctcatttcctttgtaaaattttgattgtcgcaaaaaattgtcacatatatggatgttcaaataacacaactc 44914459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 50149067 - 50149132
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||| ||||  |||||||||||||||| |  ||||||||||||||||||||||||    
T  50149067 ctttgtaaaattttgattgttgcaaaagttgtcatataaaatgatgttcaaataacacaactcttt 50149132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 21401519 - 21401583
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||| ||||  |||||||||||| ||| || |||||||||||||||||||||||    
T  21401519 ctttgtaaaattttgattgtttcaaaagttgtcacataaatggatgttcaaataacacaactctt 21401583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 46907316 - 46907380
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||    
T  46907316 ctttataaaattttgattgtctcaaaagttgtcgtataaatggatgttcaaataacacaactctt 46907380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 6809706 - 6809757
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||||||||||||||| |||||||||||||||| || |||||||||||||||    
T  6809706 taaaattttggttgtcccaaaagttgtcatataaatggatgttcaaataaca 6809757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 43775327 - 43775392
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||| |||||| ||||||||||| ||||||  || |||||||||||||| |||||    
T  43775327 ctttgtaaaattttgattgtcataaaagttgtcacatatatgaatattcaaataacacaagtcttt 43775392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 50333337 - 50333394
Alignment:
Q  31 aattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||||||||| |||||| |||| | ||||||||||| |||||    
T  50333337 aattttggttgtcacaaaagttgtcacatatatggatggttaaataacacaattcttt 50333394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 40328718 - 40328654
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||| |  |||||||| |||| || |||||||||||||||||| ||||||||    
T  40328718 tttgtaaaattttggttatatcaaaagttatcatctaaatagatgttcaaataacataactcttt 40328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 26207962 - 26208024
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||| ||||||||| || ||||||||||| | || || ||||||||||||||||||||||||    
T  26207962 ctttgcaaaattttgattatcacaaaagttataatctaaatagatgttcaaataacacaactc 26208024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 30735265 - 30735180
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||| ||| |||||| || || |||| |||||||||| ||||||||||| || ||| ||| || ||| ||||||||||||||||||    
T  30735265 ttttatgctactacctcatttactttataaaattttgattgtcacaaaaattatcacatacatggatattcaaataacacaactct 30735180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 49065314 - 49065253
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||||||||||||| ||   ||| |||||||||| |||||| ||||||||||||||||    
T  49065314 ctttgtaaaattttggttatctttaaaattgtcatataaatagatattcaaataacacaact 49065253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 9988074 - 9988134
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||||||||||||||  |||| ||||| ||||| |  ||||||||||||||||||||    
T  9988074 tttgtaaaattttggttgttgcaaaggttgtaatataaaatgatgttcaaataacacaact 9988134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 15470028 - 15469945
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||| || |||||| || ||||||| |||||||||  ||||||||||| || ||| ||||||  ||||||||||||||||||||    
T  15470028 ttttgcgctactacctcatttcctttataaaattttaattgtcacaaaa-ttatcacatatatgaatgttcaaataacacaactc 15469945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 2269517 - 2269458
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||||  ||||||||||||||||  |  || |||||||||||||||||||    
T  2269517 taaaattttggttgtatcaaaagttgtcatataattgaatattcaaataacacaactctt 2269458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 26021025 - 26020970
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||||||||||||| ||||| |||||| ||||||||| ||  ||||||||||||||    
T  26021025 tttgtaaaattttgattgtctcaaaagatgtcatataaatgaatgttcaaataaca 26020970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 41677260 - 41677221
Alignment:
Q  49 agttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  41677260 agttgtcacatatatggatgttcaaataacacaactcttt 41677221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 49647096 - 49647038
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||| |||||  |||||||||||||||| ||  |||||||||||||| ||||||    
T  49647096 taaaattttagttgtttcaaaagttgtcatataaatgaatgttcaaataacataactct 49647038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3159475 - 3159516
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgt 42  Q
    |||||||| |||||| || |||||||||||||||||||||||    
T  3159475 ttttgtgccactacctcatttcctttgtaaaattttggttgt 3159516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 18512293 - 18512228
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||| ||||||||| ||||||  |||| || ||||||| || |||||| |||||||||||||||||    
T  18512293 ctttataaaattttagttgtcttaaaaattatcatataaattgatgttgaaataacacaactcttt 18512228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 29359773 - 29359810
Alignment:
Q  50 gttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  29359773 gttgtcatatatatgaatgttcaaataacacaactctt 29359810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 30570645 - 30570706
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||||||||| ||||  ||||| || ||||||| ||  |||||||||||||||||||    
T  30570645 ctttgtaaaattttgattgtttcaaaaattatcatataaatgaatgttcaaataacacaact 30570706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 47215755 - 47215791
Alignment:
Q  39 ttgtcacaaaagttgtcatatatatagatgttcaaata 76  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  47215755 ttgtcacaaaagttgtcat-tatatagatgttcaaata 47215791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 37685428 - 37685512
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||| |||||||||||||  ||||||||||| || ||| || |||  |||||||||||||| |||||    
T  37685428 ttttgtgtcactacctcatttcttttgtaaaattttaattgtcacaaaaattatcacatgtatgaatgttcaaataacataactc 37685512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 37700090 - 37700006
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||| |||||||||||||  ||||||||||| || ||| || |||  |||||||||||||| |||||    
T  37700090 ttttgtgtcactacctcatttcttttgtaaaattttaattgtcacaaaaattatcacatgtatgaatgttcaaataacataactc 37700006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 38956590 - 38956506
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  38956590 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 38956506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3937095 - 3937007
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||| | |||| || ||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  3937095 ttttgtgccaatacctcatttcctttataaaattttggttgtcacaaaagttgtcacatgtatggatgttcaaataacacaactctttc 3937007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 44895544 - 44895460
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| |||||    
T  44895544 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacataactc 44895460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43025439 - 43025524
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| |||| | || ||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||    
T  43025439 ttttgtgccactatctcatttcctttgtaaaattttagttgttacaaaagttgtcacatatatagatgttcgaataacacaactct 43025524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 40417895 - 40417957
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||    
T  40417895 ctttgtaaaattttggttgtctcaaaagttgtcgtataaatagatgttcaaataacacaactc 40417957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41989689 - 41989628
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  41989689 tttgtaaaattttggttgtcacaaaagttatcacatatatggatgttcaaataacacaactc 41989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 46022217 - 46022153
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  46022217 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 46022153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 32529819 - 32529745
Alignment:
Q  10 actaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||| || |||||||||||||||||| ||||||||||| |||||| |||||| |||| |||||||||||||||    
T  32529819 actacctcatttcctttgtaaaattttgattgtcacaaaaattgtcacatatatggatgctcaaataacacaact 32529745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 43942753 - 43942819
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    ||||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||||||||||||    
T  43942753 ctttgtaaaattttggttgccacaaaaattatcacatatatggatgttcaaataacacaactctttc 43942819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24614288 - 24614203
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||  |||||| || |||||||||||||||||| || ||||||||||| ||| ||||||  |||||||||||||||||||||    
T  24614288 ttttgtgtcactacctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatgaatgttcaaataacacaactct 24614203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40112926 - 40112841
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| ||||||  | |||||||||||||||||| |||||| | ||||||| | |||||| ||||||||||||||||||||||    
T  40112926 ttttgtgccactaccttatttcctttgtaaaattttgattgtcagagaagttgttacatatatggatgttcaaataacacaactct 40112841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7701665 - 7701729
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| ||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  7701665 ctttataaaactttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 7701729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22918141 - 22918057
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || |||||||||||||||||| ||||| |||||||||||| || ||| |||| |||||||| |||||||    
T  22918141 ttttgtgccactacctcatttcctttgtaaaattttgattgtcgcaaaagttgtcacatgtatggatgctcaaataatacaactc 22918057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 3614396 - 3614333
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||||  |||||||||||||||| || ||||||||||||||| ||||||    
T  3614396 ctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacataactct 3614333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 25192889 - 25192802
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||  |||||| || || |||||||||||||| ||||||||||||||||||| || |||  || ||||||||||||||||||||    
T  25192889 ttttgtgtcactacctcattttctttgtaaaattttagttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactcttt 25192802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 35072312 - 35072249
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||| |||||||||||||||  |||||||||||||||| || |||||||| |||||||||||||    
T  35072312 ctttataaaattttggttgtttcaaaagttgtcatataaatggatgttcagataacacaactct 35072249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 35098648 - 35098590
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||  |||||||||||||||| || ||| ||||||||||||||||||    
T  35098648 taaaattttggttgtttcaaaagttgtcatataaatggatattcaaataacacaactct 35098590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 41189496 - 41189428
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgt--catatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||||| |||||| ||||||| |  |||||||||  |||||||||||||||||||||    
T  41189496 ttcctttgtaaaattttgattgtcataaaagttatcacatatatatgaatgttcaaataacacaactct 41189428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 45851160 - 45851095
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||| ||||||| |||| |||| | | |||| |||||||||||||||||||||    
T  45851160 ttcctttgtaaaattttagttgtcaaaaaaattgtgacagatatggatgttcaaataacacaactc 45851095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 46095083 - 46095137
Alignment:
Q  32 attttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||| ||||| |||| ||||||||||| |||||| ||||||||||||||||||    
T  46095083 attttgattgtctcaaaggttgtcatataaatagatattcaaataacacaactct 46095137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 32803813 - 32803870
Alignment:
Q  26 tgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaac 83  Q
    |||||||||||  ||||  |||||||||||||||| || |||||||||||||||||||    
T  32803813 tgtaaaattttaattgtttcaaaagttgtcatataaatggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 38944918 - 38944979
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||||||||| |||||  ||||||||||||||| ||  ||||| |||||||||||||    
T  38944918 ctttgtaaaattttgattgtcttaaaagttgtcatataaatgaatgtttaaataacacaact 38944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 31445439 - 31445502
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| ||||  ||||| || ||||||| |  ||||||||||||||||||||||    
T  31445439 ctttgtaaaattttgattgttgcaaaaattatcatataaaatgatgttcaaataacacaactct 31445502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 20337432 - 20337497
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||| || ||||| || || ||||||||||| | |||| ||||||||||||||| ||||||    
T  20337432 ctttgtaaatttatggttatctcataagttgtcatacaaatagttgttcaaataacacacctcttt 20337497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 33578266 - 33578201
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||| |||||  |||| ||||||||||| |  ||  ||||||||||||||||||||    
T  33578266 ctttgtaaaattttagttgttgcaaaggttgtcatataaaatgacattcaaataacacaactcttt 33578201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38073319 - 38073364
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||||| | |||| || |||||||||||||||||||||||||||    
T  38073319 ttttgtgccaatacctcatttcctttgtaaaattttggttgtcaca 38073364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 44649278 - 44649221
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacac 80  Q
    |||| ||||||||| |||||| |||||||||||||  | ||||||||| |||||||||    
T  44649278 ctttataaaattttagttgtctcaaaagttgtcatgaaaatagatgtttaaataacac 44649221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 46578080 - 46578023
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||| | || || ||| |||||| ||||||||||||| |||||||    
T  46578080 taaaattttggttgtcatagaaattatcacatatatggatgttcaaataagacaactc 46578023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 552892 - 552976
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  552892 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactc 552976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 14818031 - 14818115
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14818031 ttttgtgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcatatatataaatgttcaaataacacaactc 14818115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 15974726 - 15974794
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  15974726 ttcctttgtaaaattttggttgtcacaaaagttgttacatatatggatgttcaaataacacaactcttt 15974794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 33430334 - 33430246
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||||||||    
T  33430334 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatgaatgtccaaataacacaactctttc 33430246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 32316878 - 32316815
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  32316878 ctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactct 32316815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 34047508 - 34047575
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttca 90  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||| ||||||||||    
T  34047508 ctttgtaaaattttggttgtcacaaaagttgtcacatttatggatgttcaaataacaaaactctttca 34047575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 26595470 - 26595535
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||  |||||||||||||||| || ||||||||||||||||||||||||    
T  26595470 ctttgtaaaattttggttgtttcaaaagttgtcatataaatggatgttcaaataacacaactcttt 26595535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 16199571 - 16199635
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  16199571 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 16199635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 31077893 - 31077977
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||||||||||||||||||||||||||||||||| || |||  || |||||||||||||||||    
T  31077893 ttttgtgtcactacctcacttcctttgtaaaattttggttgtcacaaaagttgtcacatgtatgaatattcaaataacacaactc 31077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 18737517 - 18737451
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||| ||| ||||    
T  18737517 ctttgtaaaattttggttgtcacaaaagttgtcacatacatggatgttcaaataacactactgtttc 18737451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1156819 - 1156904
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||| |||| | || |||||||  ||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||    
T  1156819 ttttgtgccactatctcatttcctttacaaaattttgattgtcacaaaagttatcaaatatatggatgttcaaataacacaactct 1156904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 22079513 - 22079451
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||| ||||||||||||||||||||||| ||||| || || |||||||||||||||||||||    
T  22079513 ctttgcaaaattttggttgtcacaaaagtggtcatctaaatggatgttcaaataacacaactc 22079451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 4820488 - 4820552
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||| ||||| |||||||| |||| || |||| |||||||||||||||||||||    
T  4820488 ctttgtaaaattttgattgtctcaaaagttatcatgtaaatagttgttcaaataacacaactctt 4820552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 11612287 - 11612370
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||||| |||| || || ||||||||||||||| || |||||||| || ||| ||||||| || ||||||||||||||||    
T  11612287 ttttgtgcaaatacctcattttctttgtaaaattttgattatcacaaaaattatcacatatataaatattcaaataacacaact 11612370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 17551322 - 17551267
Alignment:
Q  30 aaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||| | ||||||| | ||||||||||||||||||||||||    
T  17551322 aaattttggttgtcacaaatgctgtcataaaaatagatgttcaaataacacaactc 17551267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5694104 - 5694039
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||| ||||||| |||||||||||| ||| ||  ||||| ||||||||||||||    
T  5694104 ttcctttgtaaaatttaggttgtctcaaaagttgtcacatacatgaatgtttaaataacacaactc 5694039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 13689947 - 13689882
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||| ||||||||| ||||||  |||| |||||| |||||| |||||||||||||||||||||    
T  13689947 ttcctttataaaattttagttgtcgtaaaaattgtcacatatatggatgttcaaataacacaactc 13689882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 24900895 - 24900962
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttca 90  Q
    ||||||||||||||  ||||  |||| ||||||||||| |  ||||||||||||||||||||||||||    
T  24900895 ctttgtaaaattttaattgttgcaaatgttgtcatataaaatgatgttcaaataacacaactctttca 24900962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 91793 - 91847
Alignment:
Q  34 tttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||| |||||| || || ||| |||||||||||||||||||||||    
T  91793 tttggttgtcacaacagttgtaatctaaataaatgttcaaataacacaactcttt 91847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 277112 - 277174
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||||||||| ||||||| || |   ||||| ||||||||||||||    
T  277112 ctttgtaaaattttggttgtcacaaaaattgtcatctaaaggaatgtttaaataacacaactc 277174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 30457633 - 30457689
Alignment:
Q  30 aaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||| || |||||||||||||||| || |||||| || ||||||||||||    
T  30457633 aaattttggttatctcaaaagttgtcatataaatggatgttgaattaacacaactct 30457689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 31883253 - 31883183
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaata 93  Q
    |||||||||||| |||||||| ||||| ||||||   | |||| ||||||||||| ||||||||| |||||    
T  31883253 ctttgtaaaattatggttgtcccaaaaattgtcaatcaaatagttgttcaaataatacaactcttacaata 31883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 11014935 - 11014890
Alignment:
Q  28 taaaattttggttgtcacaaaagttgtcatatatatagatgttcaa 73  Q
    |||||||||| ||||| |||||||| ||||||| ||||||||||||    
T  11014935 taaaattttgattgtctcaaaagttatcatataaatagatgttcaa 11014890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 76591 - 76504
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  76591 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttaaaataacacaactcttt 76504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 44)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9760117 - 9760204
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9760117 ttttgtgccactacctcatttccttggaaaaattttggttgtcacaaaagttgtcacatatatagatgttcaaataacacaactcttt 9760204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18254181 - 18254094
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||| | || ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  18254181 ttttgtgccactatctcatttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacacaactcttt 18254094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9207689 - 9207772
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||| |||||| || |||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  9207689 ttttgtgccactacctcatttcctttgtaaaattttggttgtcacaaaaattatcacatatatagatgttcaaataacacaact 9207772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 22888789 - 22888703
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| | |||| || |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22888789 ttttgtgccaatacctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaactctt 22888703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 42421869 - 42421783
Alignment:
Q  2 tttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||| |||||| || ||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  42421869 tttgtgccactacctcatttcctttctaaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 42421783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 1248785 - 1248871
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||| || |||||||||||||||||  || ||||||||||||||| |||||| |||||||||||||||||||||||    
T  1248785 ttttgtgccactacctcatttcctttgtaaaattttaattatcacaaaagttgtcacatatatggatgttcaaataacacaactctt 1248871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 43487478 - 43487564
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||  |||||| || ||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||||    
T  43487478 ttttgtgtcactacctcatttcctttgtaaaattttggttgttacaaaaattgtcacatatatggatgttcaaataacacaactctt 43487564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 6049317 - 6049236
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||| | |||| || |||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||    
T  6049317 ttttgtgccaatacctcatttcctttgtaaaattttgattgtcacaaaagttgtcacatatatggatgttcaaataacacaa 6049236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2076690 - 2076754
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  2076690 ctttgtaaaattttggttgtcacaaaagttgtcacatctattgatgttcaaataacacaactctt 2076754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 21611604 - 21611540
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  21611604 tttgtaaaattttggttgtcataaaagttgtcacatatatggatgttcaaataacacaactcttt 21611540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 32477450 - 32477518
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  32477450 ttcctttgtcaaattttggttgtcacaaaagttgtcacatatatgaatgttcaaataacacaactcttt 32477518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 37737924 - 37737858
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  37737924 ttcctttgtaaagttttggttgtcacaaaagttgtcacatatatggacgttcaaataacacaactct 37737858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 41195702 - 41195768
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||||||||||||||||||| | ||||||  |||||||||||||||||||||    
T  41195702 ttcctttgtaaaattttggttgtcacaaaagttgttacatatatgaatgttcaaataacacaactct 41195768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 3838833 - 3838768
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||    
T  3838833 ttcctttgtaaaattttaattatcacaaaagttgtcacatatatagatgttcaaataacacaactc 3838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 9990809 - 9990878
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||||||||||||  |||||||||||||| ||| |||||| |||||||||||||||||||||||||    
T  9990809 ttcctttgtaaaattttaattgtcacaaaagttatcacatatatggatgttcaaataacacaactctttc 9990878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 42091457 - 42091393
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgt--catatatatagatgttcaaataacacaa 82  Q
    |||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  42091457 ttcctttgtaaaattttggttgtcacaaaaattgtcacatatatatagatgttcaaataacacaa 42091393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 3097811 - 3097747
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  3097811 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaactctt 3097747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 9647250 - 9647318
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||  |||||||||||||||||||||||    
T  9647250 ttcctttgtaaaattttggttgtcacaaaagttatcgcatatatgaatgttcaaataacacaactcttt 9647318  T

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Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 13333120 - 13333056
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||    
T  13333120 ctttataaaattttggttgtctcaaaagttgtcatataaatcgatgttcaaataacacaactctt 13333056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 9194340 - 9194427
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| | |||| || ||| |||||||||||||||||||||||||| |||| | ||||||  |||||||||||||||||||||||    
T  9194340 ttttgtgccattacctcatttcttttgtaaaattttggttgtcacaaaaattgttacatatatgaatgttcaaataacacaactcttt 9194427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 41056697 - 41056636
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||| |||||||||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  41056697 ctttataaaattttggttgtctcaaaagttgtcatataaatggatgttcaaataacacaact 41056636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 25270532 - 25270468
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||| |||||||||||||||| | |||||||||||||| || |||||||||||||||||||||||    
T  25270532 ctttataaaattttggttgtctcgaaagttgtcatataaatggatgttcaaataacacaactctt 25270468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 41042372 - 41042440
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||| ||||||||||||||||| |||| |||||| |||||| ||||||||||||||| ||||||||    
T  41042372 ttcctttataaaattttggttgtcataaaaattgtcacatatatggatgttcaaataacagaactcttt 41042440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 27490680 - 27490617
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| |||||||||||||||||||  | || ||||||||||||||||||||||    
T  27490680 ctttgtaaaattttgattgtcacaaaagttgtcatcaaaatggatgttcaaataacacaactct 27490617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 34945062 - 34944979
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||||| |||||| || ||| |||||||||||||||||||||| |||||||||| ||||||  || ||||| ||||||||||    
T  34945062 ttttgtgccactacctcatttcttttgtaaaattttggttgtcacgaaagttgtcacatatatgaatattcaattaacacaact 34944979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 7698270 - 7698354
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| ||||||  | |||||||||||||||||  || ||||||||||| ||| || ||||||||||| |||||||||||||    
T  7698270 ttttgtgccactacctaatttcctttgtaaaattttaattatcacaaaagttatcacatgtatagatgttctaataacacaactc 7698354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8848647 - 8848583
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||| ||||||||| ||||||||||| || |||| || ||||||||||||||||||||||||||    
T  8848647 ctttgcaaaattttgattgtcacaaaaattatcatctaaatagatgttcaaataacacaactctt 8848583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 19633390 - 19633466
Alignment:
Q  10 actaccacaattcctttgtaaaattttggttgtcacaaaagttgtc-atatatatagatgttcaaataacacaactc 85  Q
    |||||| || |||||||||||||||||| |||||||||||||| || | ||||||| |||||||||||| |||||||    
T  19633390 actacctcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaactc 19633466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 19830291 - 19830367
Alignment:
Q  10 actaccacaattcctttgtaaaattttggttgtcacaaaagttgtc-atatatatagatgttcaaataacacaactc 85  Q
    |||||| || |||||||||||||||||| |||||||||||||| || | ||||||| |||||||||||| |||||||    
T  19830291 actacctcatttcctttgtaaaattttgattgtcacaaaagttatcaacatatataaatgttcaaataatacaactc 19830367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 42434247 - 42434302
Alignment:
Q  30 aaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||    
T  42434247 aaattttgatcgtctcaaaagttgtcatataaatagatgttcaaataacacaactc 42434302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 29349627 - 29349688
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||||||||| ||||||||||||||||||| || || |||||| |||||||| ||||    
T  29349627 ctttgtaaaattttgattgtcacaaaagttgtcatctaaatggatgttgaaataacataact 29349688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 42340683 - 42340641
Alignment:
Q  45 caaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||| |||| ||||||||||||||||||||||||||    
T  42340683 caaaagttgtcctataaatagatgttcaaataacacaactctt 42340641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 5054109 - 5054056
Alignment:
Q  36 tggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    |||||||| |||||||||||||||| |||| | || ||||||||||||||||||    
T  5054109 tggttgtctcaaaagttgtcatataaatagttttttaaataacacaactctttc 5054056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 136049 - 136108
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||| |||||| |||||||   |||||| || ||||||||||||||||||||||    
T  136049 tttgtaaaattttagttgtctcaaaagt---catataaatggatgttcaaataacacaactct 136108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 1352510 - 1352574
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||| |||||  |||| ||||| ||||| |  |||||||||||||||||||||||    
T  1352510 ctttgtaaaattttagttgttgcaaaggttgttatataaaatgatgttcaaataacacaactctt 1352574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 16973710 - 16973646
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||||||||||||||  ||| |||||||  ||| ||||||||| |||||||| ||||||||    
T  16973710 tttgtaaaattttggttgtatcaatagttgtccaataaatagatgtttaaataacaaaactcttt 16973646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 17388537 - 17388503
Alignment:
Q  51 ttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||| ||||||||||||||||||||||||||||    
T  17388537 ttgtcacatatatagatgttcaaataacacaactc 17388503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 18846733 - 18846795
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||| ||||||||| |||||| |||| ||||||| || || ||||||||||||||| ||||||    
T  18846733 tttgcaaaattttgattgtcataaaaattgtcatctaaatggatgttcaaataacataactct 18846795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 28494984 - 28495042
Alignment:
Q  26 tgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||||| || ||||||||||||||||||| || || || | ||||||||||||||||||    
T  28494984 tgtaaatttatggttgtcacaaaagttgtaatttaaatggttgttcaaataacacaact 28495042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17388575 - 17388530
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||||| |||||| || |||||||||||||||||| ||||||||    
T  17388575 ttttgtgccactacctcatttcctttgtaaaattttgattgtcaca 17388530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 22416349 - 22416386
Alignment:
Q  50 gttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  22416349 gttgtcacatatatggatgttcaaataacacaactctt 22416386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 32701212 - 32701273
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||| || |||||| | |||||||| ||||||| || | |||||||||||||||||||    
T  32701212 tttgtaaacttatggttgccccaaaagttatcatataaatggttgttcaaataacacaactc 32701273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19109065 - 19108993
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaa 73  Q
    |||||||| |||||  || |||||||| ||||  || ||||||||||||||||||| ||||||  ||||||||    
T  19109065 ttttgtgccactacttcatttcctttgcaaaaaatttgttgtcacaaaagttgtcacatatatgaatgttcaa 19108993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 37078134 - 37078166
Alignment:
Q  54 tcatatatatagatgttcaaataacacaactct 86  Q
    ||||||| |||||||||||||||||||||||||    
T  37078134 tcatataaatagatgttcaaataacacaactct 37078166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 8767 - 8854
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||  |||||| || ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  8767 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcataaaagttgtcagatatatggatgttcaaataacacaactcttt 8854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22719539 - 22719623
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||| || || |||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||    
T  22719539 ttttgtgcaactacctcattttctttgtaaaattttggttatcacaaaagttgtcacatatatggctgttcaaataacacaactc 22719623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 12898882 - 12898815
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  12898882 ttcctttgtaaaattttggttgtcacaaaagttgtcacatatatggatgttcaaataacataactctt 12898815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 27325857 - 27325943
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||| |||||| || |||||||||||||||||| || |||| |||||||||| |||||| |||||||||||||||||||||||    
T  27325857 ttttgtgccactacctcatttcctttgtaaaattttgattatcacgaaagttgtcacatatatggatgttcaaataacacaactctt 27325943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 11253492 - 11253429
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11253492 ctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactct 11253429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 37449397 - 37449310
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||||| || |||||||||||||||||| || ||||||||||| ||| |||||| ||| ||||||||||||||||||||    
T  37449397 ttttgtgctactacctcatttcctttgtaaaattttgattatcacaaaagttatcacatatatggatattcaaataacacaactcttt 37449310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 32501168 - 32501087
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    |||||||  |||||| || |||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||    
T  32501168 ttttgtgtcactacctcatttcctttgtaaaattttggttgtcacaaaaattctcacatatatggatgttcaaataacacaa 32501087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34186706 - 34186791
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||  |||||| || |||||||| ||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||    
T  34186706 ttttgtgtcactacctcatttcctttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcaaataacacaactct 34186791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 37133812 - 37133747
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    ||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||||||||    
T  37133812 ctttgtaaaattttggttgtcacaaaagttgtcatctaaatggatgttaaaataacacaactcttt 37133747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 4054258 - 4054174
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||| |||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  4054258 ttttgtgtcactacctcatttcatttgtaaagttttgattgtcacaaaagttgtcacatatataaatgttcaaataacacaactc 4054174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 29025381 - 29025444
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||||||| |||||||||||||||| || |||||| |||||||||||||||    
T  29025381 ctttgtaaaattttggttgtcccaaaagttgtcatataaatggatgtttaaataacacaactct 29025444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 24479341 - 24479407
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||    
T  24479341 ttcctttgtaaaattttagttgtcacaaaagttatcatatatatgaatgctcaaataacacaactct 24479407  T

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Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 42768322 - 42768387
Alignment:
Q  20 ttcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||| |||||||||||| || ||| |||||| |||||||||||||||||||||    
T  42768322 ttcctttgtaaaattttagttgtcacaaaaattatcacatatatggatgttcaaataacacaactc 42768387  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 36816566 - 36816507
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaa 82  Q
    ||||| ||||||||| || ||||||||||||||| |||||||||||||||||||||||||    
T  36816566 ctttgcaaaattttgattatcacaaaagttgtcacatatatagatgttcaaataacacaa 36816507  T

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Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 43397880 - 43397967
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactcttt 88  Q
    |||||||| |||| | || || |||||||||||||||||||||||||||| ||||| || ||| ||||||||| ||||||| ||||||    
T  43397880 ttttgtgccactatctcattttctttgtaaaattttggttgtcacaaaagctgtcacatgtatggatgttcaattaacacatctcttt 43397967  T

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Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 36251425 - 36251503
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||||||  |||||| || |||||||||||||||||| ||||||| |||||| ||| |||||| |||||||||||||||    
T  36251425 ttttgtgtcactacctcatttcctttgtaaaattttgattgtcacgaaagttatcacatatatggatgttcaaataaca 36251503  T

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Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 5277471 - 5277393
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataaca 79  Q
    |||||||  |||||| || |||||||||||||||||| |||||||| || |||||| || ||| |||||||||||||||    
T  5277471 ttttgtgtcactacctcatttcctttgtaaaattttgattgtcacataaattgtcacatgtatggatgttcaaataaca 5277393  T

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Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 7271972 - 7272033
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||| ||||||||| |||||||||||||||||| || ||| |||||||| ||||||||||||    
T  7271972 tttgcaaaattttgattgtcacaaaagttgtcacatgtatggatgttcatataacacaactc 7272033  T

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Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 36660400 - 36660339
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    |||| |||||||||| |||||||||||||| ||| || ||| ||||||||||||||||||||    
T  36660400 ctttataaaattttgattgtcacaaaagttatcacatttatggatgttcaaataacacaact 36660339  T

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Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 10692551 - 10692615
Alignment:
Q  22 cctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    |||||||||||||||| |||||| | |||||| || |||||| ||||||||||||| ||||||||    
T  10692551 cctttgtaaaattttgattgtcagagaagttgacacatatatggatgttcaaataatacaactct 10692615  T

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Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 32133445 - 32133505
Alignment:
Q  24 tttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaact 84  Q
    ||||||||||||||||| || ||||| || ||||||| || ||||||||||||||||||||    
T  32133445 tttgtaaaattttggttatctcaaaatttatcatataaatggatgttcaaataacacaact 32133505  T

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Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 23754656 - 23754594
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    ||||||||||||||||||||  |||| ||||||||||| |   ||||||||||||||||||||    
T  23754656 ctttgtaaaattttggttgttgcaaaggttgtcatataaaataatgttcaaataacacaactc 23754594  T

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Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 10839432 - 10839368
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctt 87  Q
    |||||||||||||| |||||| ||||| || ||||| | || |||||||||||||||| ||||||    
T  10839432 ctttgtaaaattttagttgtctcaaaaattatcataaaaatggatgttcaaataacactactctt 10839368  T

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Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 36969624 - 36969556
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaa 91  Q
    |||||||||| | |||||||| || ||||||||| | | || |||||||||||||||||||||| ||||    
T  36969624 ctttgtaaaaatatggttgtcgcataagttgtcaaacaaatggatgttcaaataacacaactctatcaa 36969556  T

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Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 7598836 - 7598891
Alignment:
Q  30 aaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||||||||| |||||||| |||||||  |  ||||||||||||||||||||    
T  7598836 aaattttggttgtctcaaaagttttcatataattgaatgttcaaataacacaactc 7598891  T

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Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 13106601 - 13106672
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaatat 94  Q
    ||||||||| || ||||||| | |||||||||||  || || | |||||||||||||||||||||| |||||    
T  13106601 ctttgtaaatttatggttgttataaaagttgtcacctaaatggttgttcaaataacacaactcttttaatat 13106672  T

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Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 31249459 - 31249422
Alignment:
Q  50 gttgtcatatatatagatgttcaaataacacaactctt 87  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  31249459 gttgtcacatatatggatgttcaaataacacaactctt 31249422  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 31249496 - 31249451
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcaca 46  Q
    |||||| | |||||| || |||||||||||||||||||||||||||    
T  31249496 ttttgtaccactacctcatttcctttgtaaaattttggttgtcaca 31249451  T

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Target: scaffold0098 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 49394 - 49478
Alignment:
Q  1 ttttgtgcaactaccacaattcctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactc 85  Q
    |||||||  |||||| || ||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| |||||    
T  49394 ttttgtgtcactacctcatttcctttgtaaaattttggttatcacaaaagttgtcacatatatggatgttcaaataacataactc 49478  T

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Target: scaffold0519 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 11903 - 11966
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  11903 ctttgtaaaattttggtcgtcacaaaagttgtcatatttatagatgttcaaataatacaactct 11966  T

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Target: scaffold0148 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 20845 - 20785
Alignment:
Q  29 aaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttc 89  Q
    ||||||||| || |||||||| || |||| || || |||||||||||||||||||||||||    
T  20845 aaaattttgattatcacaaaaattatcatttaaatggatgttcaaataacacaactctttc 20785  T

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Target: scaffold0087 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 53311 - 53240
Alignment:
Q  23 ctttgtaaaattttggttgtcacaaaagttgtcatatatatagatgttcaaataacacaactctttcaatat 94  Q
    |||| |||| |||||||||||  |||| || ||||||| ||| |||||||||||||||||||| || |||||    
T  53311 ctttataaatttttggttgtctaaaaacttatcatataaataaatgttcaaataacacaactcattaaatat 53240  T

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Target: scaffold0184 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 16716 - 16676
Alignment:
Q  46 aaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  16716 aaaagttgtcatataaatggatgttcaaataacagaactct 16676  T

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Target: scaffold0078 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 56128 - 56168
Alignment:
Q  46 aaaagttgtcatatatatagatgttcaaataacacaactct 86  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  56128 aaaagttgtcatataaatggatgttcaaataacagaactct 56168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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