View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_26 (Length: 232)
Name: NF11287_low_26
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 4904183 - 4903972
Alignment:
| Q |
1 |
caactgaacccaaacagaaaaacacgtaacaaacagaccaactacaaacaatcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac |
100 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904183 |
caacagaacccaaacagaaaaacacctaacaaacagaccaactacaatcattcctaaagaagcagcttagaagctaactgcctacaccagaaccgaaaac |
4904084 |
T |
|
| Q |
101 |
cagcaccgcaacagactgttaagccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4904083 |
cagcaccgcaacagactgttaaaccagagaaacacgactacagaacaaccagaaggccaccaaacagccacacagccaaagaagccagcatcaccgcaac |
4903984 |
T |
|
| Q |
201 |
aaacaatccttc |
212 |
Q |
| |
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|||||||||||| |
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| T |
4903983 |
aaacaatccttc |
4903972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 22153441 - 22153586
Alignment:
| Q |
69 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
167 |
Q |
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||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
22153441 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22153540 |
T |
|
| Q |
168 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcg |
213 |
Q |
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| T |
22153541 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcg |
22153586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 22209356 - 22209501
Alignment:
| Q |
69 |
agaagctaactgcctacaccagaaccgaaaaccagcaccgcaacagactgtta-agccagagaaacacgactacagaacaaccagaaggccaccaaacag |
167 |
Q |
| |
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||||||||||||| ||||||| ||| ||||||||||||| ||| ||||||||| | |||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
22209356 |
agaagctaactgcatacaccataactgaaaaccagcaccacaatagactgttataaccagagaaacgcgactgcataacaaccagaaggcgaccaaacag |
22209455 |
T |
|
| Q |
168 |
ccacacagccaaagaagccagcatcaccgcaacaaacaatccttcg |
213 |
Q |
| |
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|| |||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
22209456 |
ccgcacaaccaaagaagccagcatcaccgcaacaaacaaaccttcg |
22209501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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