View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11287_low_3 (Length: 533)
Name: NF11287_low_3
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 515
Target Start/End: Complemental strand, 40394599 - 40394099
Alignment:
| Q |
14 |
tggacatcaactatttccagggaaagaactatttggaagtaagtttgtgactatctgttgaatagtaacttattaggaaaatcaggataatttgcacaca |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40394599 |
tggaaatcaactatttccagggaaagaactatttggaagtaagtttgtgactatctgttgaatagtaacttattaggaaaatcaggataatttgcacacg |
40394500 |
T |
|
| Q |
114 |
tttatcaattctacaattttaagttggtgcatttggaacgatatatgtattggtgtgccttgtggtctgcggnnnnnnnntgaagcgaaggagaatgagt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40394499 |
tttatcaattctacaattttaagttggtgtatttggaactatatatgtattggcgtgccttgtggtctgcggaaaaaaaatgaagcgaaggagaatgagt |
40394400 |
T |
|
| Q |
214 |
taatgggtgttgaaacaatttgtctcaaagtatatgcatgaaatatttagcccttttatctttcgtgtaatgcttatattggaattgtggcatccgtttc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40394399 |
taatgggtgttgaaacaatttgtctcaaagtatatgcatgaaatatttagcccttttatctttcgtgtaatgcttatattggaattgtggcatccgtt-c |
40394301 |
T |
|
| Q |
314 |
agattggggttgatgttggatcatcaactattgcaagaggtgttgtaaatcttgtacttgggtacctcaaccatcttgttattgagatggcatttttaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40394300 |
agattggggttgatgttggatcatcaactattgcaagaggtgttgtaaatcttgtacttgggtacctcaaccatcttgttattgagatggcatttttaat |
40394201 |
T |
|
| Q |
414 |
acaggtaaaataataatgtaatttctttcctttcaataaattttgagctaaaattggaaaattatatatcactgaaaattcacatatggttagattcaaa |
513 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40394200 |
acaggtaaaataatattgtaatttctttcctttcaataaattttgagctaaaattggaaaattatatatcactgaaaattcacatatggttagattcaaa |
40394101 |
T |
|
| Q |
514 |
cc |
515 |
Q |
| |
|
|| |
|
|
| T |
40394100 |
cc |
40394099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University