View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11287_low_7 (Length: 434)

Name: NF11287_low_7
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11287_low_7
NF11287_low_7
[»] chr2 (13 HSPs)
chr2 (7-407)||(14202894-14203295)
chr2 (6-211)||(13563691-13563906)
chr2 (127-215)||(7421862-7421952)
chr2 (349-414)||(14634337-14634402)
chr2 (344-414)||(14635239-14635309)
chr2 (352-405)||(34140272-34140325)
chr2 (70-121)||(13571076-13571127)
chr2 (7-121)||(13574634-13574746)
chr2 (257-342)||(7421704-7421786)
chr2 (158-241)||(13570951-13571036)
chr2 (364-414)||(42288828-42288878)
chr2 (349-382)||(11152136-11152169)
chr2 (349-394)||(31639408-31639453)
[»] chr7 (4 HSPs)
chr7 (349-414)||(38671734-38671799)
chr7 (349-414)||(41649523-41649588)
chr7 (349-414)||(25615447-25615512)
chr7 (364-407)||(3258393-3258436)
[»] chr4 (4 HSPs)
chr4 (349-414)||(5869977-5870042)
chr4 (364-405)||(41963834-41963875)
chr4 (364-412)||(12072790-12072838)
chr4 (364-414)||(378777-378827)
[»] chr1 (9 HSPs)
chr1 (349-414)||(8551300-8551365)
chr1 (349-412)||(3847542-3847605)
chr1 (350-404)||(197402-197456)
chr1 (349-405)||(834653-834709)
chr1 (364-414)||(47114571-47114621)
chr1 (364-407)||(37167698-37167741)
chr1 (364-414)||(28241788-28241838)
chr1 (364-413)||(7482952-7482997)
chr1 (350-382)||(40122741-40122773)
[»] chr5 (3 HSPs)
chr5 (349-407)||(31182562-31182620)
chr5 (349-405)||(8566390-8566446)
chr5 (364-414)||(27638334-27638384)
[»] chr3 (4 HSPs)
chr3 (349-407)||(19684409-19684467)
chr3 (349-414)||(760437-760502)
chr3 (364-414)||(41820243-41820293)
chr3 (364-412)||(46859869-46859917)
[»] chr6 (3 HSPs)
chr6 (363-414)||(2973660-2973711)
chr6 (349-411)||(16568633-16568695)
chr6 (349-414)||(16566798-16566863)
[»] chr8 (1 HSPs)
chr8 (364-401)||(5003054-5003091)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 407
Target Start/End: Complemental strand, 14203295 - 14202894
Alignment:
Q  7 gaagcagagatgaattttgccatagcttatattatatcaatcagannnnnnnnnnnnnnnnnngtgattgcatggaatgaattggttacaaaattgttcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||                  |||||||||||||||||||||||||||||||||||||    
T  14203295 gaagcagagatgaattttgccatagcttatattatatcaatgagattttcttttattttttttgtgattgcatggaatgaattggttacaaaattgttcc 14203196  T
Q  107 aatttatcgaactaaacgtgaagtgaatgaattaaagttgggtttacgtgaggaatattatttttacaaaat-gaaactatgtgggagccatgctattaa 205  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14203195 aatttatagaactaaatgtgaagtgaattaattaaagttgggtttacgtgaggaatattatttttacaaaattgaaactatgtgggagccatgctattaa 14203096  T
Q  206 atttttactacgtgtgcattccttttatgattgtagactatactatatgagtaggaattaaatctggttttgcgtgtagaaaactattttcacaaaattg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14203095 atttttactacgtgtgcattccttttatgattgtagactatactatatgagtaggaattaaatctggttttgcgtgtagaaaattattttcacaaaattg 14202996  T
Q  306 aacactatatactatatgagtgggaacaatagtatttcctacagttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 405  Q
    ||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||    
T  14202995 aacactatatactttatgagtgggaacaatagtatttactactattgaaattgtcttcaaattgtgatgctctgaaagctgaaaatcgtggggcgatttt 14202896  T
Q  406 ca 407  Q
    ||    
T  14202895 ca 14202894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 13563906 - 13563691
Alignment:
Q  6 agaagcagagatgaattttgccatagcttatattatatcaatcagannnnnnnnnnnnnnnnnngtgattgcatggaatgaattggttacaaaattgttc 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||                  ||||||||||||||||||||||  |||| |||||||    
T  13563906 agaagcagagatgaattttgccatagcttatattatatcaatgagattttcttttattttgt--gtgattgcatggaatgaattggc-acaacattgttc 13563810  T
Q  106 caatttatcgaacta------------aacgtgaagtgaatgaattaaagttgggtttacgtgaggaatattatttttacaaaa-tgaaactatgtggga 192  Q
    |||||||| ||||||            || |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  13563809 caatttatggaactactgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtggga 13563710  T
Q  193 gccatgctattaaattttt 211  Q
     | ||| ||||||| ||||    
T  13563709 acaatggtattaaaatttt 13563691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 7421952 - 7421862
Alignment:
Q  127 aagtgaatgaattaaa-gttgggtttacgtgaggaatattatttttacaaaat-gaaactatgtgggagccatgctattaaatttttacta 215  Q
    |||||||||||||||| |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  7421952 aagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttttacaaaattgaaactatgtgggagccatacttttaaatttttacta 7421862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 14634402 - 14634337
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  14634402 gttgaaattgtctttaaattgtgatgttgtgaaagctgaaaattgtggcgcgattttcagaggcgt 14634337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 414
Target Start/End: Complemental strand, 14635309 - 14635239
Alignment:
Q  344 ctacagttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||| ||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||    
T  14635309 ctactgttgaaattgtattcaaattgtgatgctgtgaaagctaaaaattgtggcgcgattttcagaggcgt 14635239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 34140325 - 34140272
Alignment:
Q  352 gaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 405  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34140325 gaaattgtcttcaaattgtgatgatgtggaagctgaaaatcgtggcgcgatttt 34140272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 121
Target Start/End: Complemental strand, 13571127 - 13571076
Alignment:
Q  70 gtgattgcatggaatgaattggttacaaaattgttccaatttatcgaactaa 121  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  13571127 gtgattgcatggaatgaattagttacaaaattgttccaatttatagaactaa 13571076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 13574746 - 13574634
Alignment:
Q  7 gaagcagagatgaattttgccatagcttatattatatcaatcagannnnnnnnnnnnnnnnnngtgattgcatggaatgaattggttacaaaattgttcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||| |||                  ||||||||||||||||||||||||||||||||||||     
T  13574746 gaagcagagatgaattttgccatagcttatattatatcaatgaga--ttttcttttattttttgtgattgcatggaatgaattggttacaaaattgttct 13574649  T
Q  107 aatttatcgaactaa 121  Q
    ||||||| |||||||    
T  13574648 aatttatggaactaa 13574634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 7421786 - 7421704
Alignment:
Q  257 taggaattaaatctggttttgcgtgtagaaaactattttcacaaaattgaacactatatactatatgagtgggaacaatagtattt 342  Q
    |||||||||||| ||| |||| ||||||| || |||||||||||||||||| ||| ||   |||||||||||||| ||||||||||    
T  7421786 taggaattaaatttgggtttgtgtgtagagaattattttcacaaaattgaagactgta---tatatgagtgggaaaaatagtattt 7421704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 13571036 - 13570951
Alignment:
Q  158 ggaatattatttttacaaaa--tgaaactatgtgggagccatgctattaaatttttactacgtgtgcattccttttatgattgtag 241  Q
    ||||||||| |||||||||   ||||||||||||||| ||||  ||||||||||| |||| ||||| |||||||||||| ||||||    
T  13571036 ggaatattagttttacaaatattgaaactatgtgggaaccatattattaaattttcactatgtgtggattccttttatggttgtag 13570951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 42288878 - 42288828
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||||||| |||||||||||| |||| |||||||||| ||||||    
T  42288878 aaattgtgatgttgtaaaagctgaaaattgtggtgcgattttcagaggcgt 42288828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 382
Target Start/End: Complemental strand, 11152169 - 11152136
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaa 382  Q
    ||||||||||||||||||||||||||||||||||    
T  11152169 gttgaaattgtcttcaaattgtgatgttgtgaaa 11152136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Original strand, 31639408 - 31639453
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgt 394  Q
    |||||| ||| ||||||||||||||||||| |||||| ||||||||    
T  31639408 gttgaatttgacttcaaattgtgatgttgtaaaagctcaaaatcgt 31639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 38671799 - 38671734
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38671799 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 38671734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 41649588 - 41649523
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  41649588 gttgaaattgccttcaaattgtgatgctgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 41649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 25615447 - 25615512
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||    
T  25615447 gttgaaattgacttcaaattgtgatgctgtgaaagctgaaaattgtggcgcgattttcagaggcgt 25615512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 3258393 - 3258436
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttca 407  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  3258393 aaattgtgatgctgtgaaagctgaaaatcgtggcgtgattttca 3258436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 5869977 - 5870042
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5869977 gttgaaattgttttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 5870042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Original strand, 41963834 - 41963875
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41963834 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 41963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 12072790 - 12072838
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggc 412  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  12072790 aaattgtgatgctgtgaaagcttaaaatcgtggcgcgattttcagaggc 12072838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 378777 - 378827
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||| || ||||||||| ||||||||||||||||||| ||||||    
T  378777 aaattgtgatgctgcgaaagctgagaatcgtggcgcgattttcagaggcgt 378827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 349 - 414
Target Start/End: Complemental strand, 8551365 - 8551300
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8551365 gttgaaattgccttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 8551300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 349 - 412
Target Start/End: Complemental strand, 3847605 - 3847542
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggc 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  3847605 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgtgattttcagaggc 3847542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 197456 - 197402
Alignment:
Q  350 ttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  197456 ttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattt 197402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 834709 - 834653
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 405  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  834709 gttgaaattgtcttcaaattttgatgttgtgaaagctgaaaatcgtggcgcgatttt 834653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 47114571 - 47114621
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47114571 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 47114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 407
Target Start/End: Original strand, 37167698 - 37167741
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttca 407  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  37167698 aaattgtgatgctgtgaaagctgaaaattgtggcgcgattttca 37167741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 28241788 - 28241838
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||| |||||||||||||||| |||| |||||||||| ||||||    
T  28241788 aaattgtgatgatgtgaaagctgaaaattgtggtgcgattttcagaggcgt 28241838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 7482997 - 7482952
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcg 413  Q
    ||||||||||||||||||||||||||||    |||||||||||| |||||    
T  7482997 aaattgtgatgttgtgaaagctgaaaat----gcgcgattttcagaggcg 7482952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 40122773 - 40122741
Alignment:
Q  350 ttgaaattgtcttcaaattgtgatgttgtgaaa 382  Q
    ||||||||||||||||||||||||| |||||||    
T  40122773 ttgaaattgtcttcaaattgtgatgctgtgaaa 40122741  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 407
Target Start/End: Original strand, 31182562 - 31182620
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31182562 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtagcgcgattttca 31182620  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 8566446 - 8566390
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgatttt 405  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8566446 gttgaaattgtcttcaaattgtgatgctgtgaaagctgaaaatcgtggcgcgatttt 8566390  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 27638384 - 27638334
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||| | ||||| |||||||||||| ||||||||||| ||||||    
T  27638384 aaattgtgatgctatgaaaactgaaaatcgtgtcgcgattttcagaggcgt 27638334  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 19684467 - 19684409
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttca 407  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19684467 gttgaaattgccttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttca 19684409  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 760437 - 760502
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||    
T  760437 gttgaaattaccttcaaattgtgatgatgtgaaagttgaaaatcgtggcgcgattttcagaggcgt 760502  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 414
Target Start/End: Complemental strand, 41820293 - 41820243
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  41820293 aaattgtgatgctgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 41820243  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Original strand, 46859869 - 46859917
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggc 412  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  46859869 aaattgtgatgctgtgaaagatgaaaatcgtggcgcgattttcagaggc 46859917  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 2973711 - 2973660
Alignment:
Q  363 caaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2973711 caaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcagaggcgt 2973660  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 16568633 - 16568695
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaagg 411  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  16568633 gttgaaactgccttcaaattgtgatgctgtgaaagctgaaaatcgtggcgtgattttcaaagg 16568695  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 16566798 - 16566863
Alignment:
Q  349 gttgaaattgtcttcaaattgtgatgttgtgaaagctgaaaatcgtggcgcgattttcaaaggcgt 414  Q
    |||||||||| ||| |||||||||||  ||||||||||||||||||||| ||||||||| ||||||    
T  16566798 gttgaaattgcctttaaattgtgatgcagtgaaagctgaaaatcgtggcacgattttcagaggcgt 16566863  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 5003054 - 5003091
Alignment:
Q  364 aaattgtgatgttgtgaaagctgaaaatcgtggcgcga 401  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5003054 aaattgtgatgctgtgaaagctgaaaatcgtggcgcga 5003091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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