View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11287_low_8 (Length: 390)
Name: NF11287_low_8
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 24632672 - 24632500
Alignment:
| Q |
1 |
aacctttttatcaagaaaagcacctaatgcttgacagagaccaacagtagtagtagatttgccttcaccaagaggagttggagtaatgcctccaaccaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632672 |
aacctttttatcaagaaaagcacctaatgcttgacagagaccaacagtagtagtagatttgccttcaccaagaggagttggagtaatgcctccaaccaca |
24632573 |
T |
|
| Q |
101 |
acataatacccatcttttgattcttgcagttcatcaagagcggataacagaacctacacataataataattat |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632572 |
acataatacccatcttttgattcttgcagttcatcaagagcggataacagaacctacacataataataattat |
24632500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 196 - 372
Target Start/End: Complemental strand, 24632467 - 24632288
Alignment:
| Q |
196 |
atatatgaatcagcataagaagatgatgatgat---accttggccttatatttgccataaaggtcgtaatgattgggagtaagatttaaatgattagcaa |
292 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632467 |
atatatgaatcagcataagaagatgatgatgatgataccttggccttatatttgccataaaggtcgtaatgattgggagtaagatttaaatgattagcaa |
24632368 |
T |
|
| Q |
293 |
tctcagagatgtgaataggttgaacggagttagcaatatctatgtctgatggaacaggagacacaacatctagctttctc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24632367 |
tctcagagatgtgaataggttgaacggagttagcaatatctatgtctgatggaacaggagacacaacatctagctttctc |
24632288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 52498081 - 52498253
Alignment:
| Q |
1 |
aacctttttatcaagaaaagcacctaatgcttgacagagaccaacagtagtagtagatttgccttcaccaagaggagttggagtaatgcctccaaccaca |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52498081 |
aacctttttatcaagaaaagcacctaatgcttgacagagaccaacagtagtagtagatttgccttcaccaagaggagttggagtaatgcctccaaccaca |
52498180 |
T |
|
| Q |
101 |
acataatacccatcttttgattcttgcagttcatcaagagcggataacagaacctacacataataataattat |
173 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52498181 |
acataatacccatcttttgattcttgcagttcatcaagagcggataacagaacctacacataataataattat |
52498253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 196 - 372
Target Start/End: Original strand, 52498286 - 52498465
Alignment:
| Q |
196 |
atatatgaatcagcataagaagatg---atgatgataccttggccttatatttgccataaaggtcgtaatgattgggagtaagatttaaatgattagcaa |
292 |
Q |
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|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52498286 |
atatatgaatcagcataagaagatgatgatgatgataccttggccttatatttgccataaaggtcgtaatgattgggagtaagatttaaatgattagcaa |
52498385 |
T |
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| Q |
293 |
tctcagagatgtgaataggttgaacggagttagcaatatctatgtctgatggaacaggagacacaacatctagctttctc |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52498386 |
tctcagagatgtgaataggttgaacggagttagcaatatctatgtctgatggaacaggagacacaacatctagctttctc |
52498465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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