View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11287_low_9 (Length: 372)
Name: NF11287_low_9
Description: NF11287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11287_low_9 |
 | |
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| [»] scaffold0501 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 43146579 - 43146926
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaactaatcnnnnnnntctccata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| || |||||||| |
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| T |
43146579 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatgatatacaaaatgaattcaggaatgcattaactgat-aaaaaaatctccata |
43146677 |
T |
|
| Q |
101 |
aggaacatgccatagtaaacaaattctgtaaagaataaattattcacatgacatagtatttttagttaagtgacatgttcaccgctaagcttttcacaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43146678 |
aggaacatgccatagtaaacaaattccgtaaagaataaattattcacatgacatagtatttttagttaagtgacatgttcaccgctaagcttttcacaat |
43146777 |
T |
|
| Q |
201 |
tggcgtatgtatactacctaagaaaaaggggacgagtcatctatgtttcaaggtactgggtcacttaattaaaacttcaaccttattcacaacaaaccaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43146778 |
tggcgtatgtatactacctaagaaaaaggggacgagtcatctatgtttcaaggtactgggtcacttaattaaaacttcaaccttattcacaacaaaccaa |
43146877 |
T |
|
| Q |
301 |
agtagacacgtcacttaattaaaaatataataacaagcacaaatgtctc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43146878 |
agtagacacgtcacttaattaaaaatataataacaagcacaaatgtctc |
43146926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 35118981 - 35119031
Alignment:
| Q |
35 |
aagtaagattacatggtatacaaaatgaattcagcaatgcattaactaatc |
85 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| |||| |
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|
| T |
35118981 |
aagtaagattgcaaggtatacaaaatgaattcagcaatgcattaacaaatc |
35119031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 23922388 - 23922463
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcat |
76 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23922388 |
caactggttgacctcgagcattctaacgaagctaaagtaagattacatggtatacaaaatgaattcaacaatgcat |
23922463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 2532060 - 2531924
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaactaatcnnnnnnntctccata |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
2532060 |
caactggttgacctcgagaattctaacgaacctgaagtaacattgcagagtatacaaaatgaattcagcaatgcatcaacaaatccaaaaactctccata |
2531961 |
T |
|
| Q |
101 |
aggaacatgccatagtaaacaaattctgtaaagaata |
137 |
Q |
| |
|
||| ||||| |||||| ||||||||| ||||||||| |
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|
| T |
2531960 |
agggacatgacatagtgaacaaattccataaagaata |
2531924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 17314376 - 17314454
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaa |
79 |
Q |
| |
|
||||||||||||||| | ||||| ||||||||| ||| |||||| ||||||| ||||||||||||||| |||||||||| |
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| T |
17314376 |
caactggttgacctctagcattccaacgaacctgaagaaagattgcatggtagacaaaatgaattcagaaatgcattaa |
17314454 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0501 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0501
Description:
Target: scaffold0501; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 10924 - 11059
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaactaatcnnnnnnntctccata |
100 |
Q |
| |
|
|||||||||||||| || ||||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||| | || |||||| | |
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|
| T |
10924 |
caactggttgaccttgagcattccaaagaacctgaagtaagatt-catggtatacaaaatgaattcagcaatgcattaacaagtccgaaaaatctccaca |
11022 |
T |
|
| Q |
101 |
aggaacatgccatagtaaacaaattctgtaaagaata |
137 |
Q |
| |
|
| | ||||| |||||||||||||||| ||||||||| |
|
|
| T |
11023 |
aaggacatgacatagtaaacaaattccataaagaata |
11059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 37589 - 37725
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaactaatcnnnnnnntctccata |
100 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| ||| || ||||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
37589 |
caacttgttgacctcgagaattctaacgaacctgaagtaacattgcagagtatacaaaatgaattcagcaatgcatcaacaaatccaaaaactctccata |
37688 |
T |
|
| Q |
101 |
aggaacatgccatagtaaacaaattctgtaaagaata |
137 |
Q |
| |
|
||| ||||| |||||| ||||||||| ||||||||| |
|
|
| T |
37689 |
agggacatgacatagtgaacaaattccataaagaata |
37725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 333974 - 334052
Alignment:
| Q |
2 |
aactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaac |
80 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
333974 |
aactggttgacctcgagcattccaacgaacctgaagtaagatttcatgatatacaaaatgaattcagcaatgaattaac |
334052 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 44681 - 44759
Alignment:
| Q |
2 |
aactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaac |
80 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||| |||||| |
|
|
| T |
44681 |
aactggttgacctcgagcattccaacgaacctgaagtaagatttcatgatatacaaaatgaattcagcaatgaattaac |
44759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14142 - 14221
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcattaac |
80 |
Q |
| |
|
||||||||||||||||| ||||| | |||||| |||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
14142 |
caactggttgacctcgagcattcaattgaacctgaagtaagatttcatgatatacaaaatgaattcagtaatgcattaac |
14221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23709270 - 23709195
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcat |
76 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
23709270 |
caactagttgacctcgagcattgcaacgaaccagtagtaagattgcatggtatataaaatgaattcagcaatgcat |
23709195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23727726 - 23727651
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcat |
76 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
23727726 |
caactagttgacctcgagcattgcaacgaaccagtagtaagattgcatggtatataaaatgaattcagcaatgcat |
23727651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 23746182 - 23746107
Alignment:
| Q |
1 |
caactggttgacctcgaacattctaacgaacctaaagtaagattacatggtatacaaaatgaattcagcaatgcat |
76 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| ||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
23746182 |
caactagttgacctcgagcattgcaacgaaccagtagtaagattgcatggtatataaaatgaattcagcaatgcat |
23746107 |
T |
|
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